Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AAFQ93_RS01145 Genome accession   NZ_CP152419
Coordinates   239699..241459 (-) Length   586 a.a.
NCBI ID   WP_223140274.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 234699..246459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS01105 (AAFQ93_01105) - 234812..235006 (-) 195 WP_223140270.1 hypothetical protein -
  AAFQ93_RS01110 (AAFQ93_01110) - 235003..235209 (-) 207 WP_025171227.1 hypothetical protein -
  AAFQ93_RS01115 (AAFQ93_01115) - 235375..237039 (-) 1665 WP_223140271.1 DAK2 domain-containing protein -
  AAFQ93_RS01120 (AAFQ93_01120) - 237042..237407 (-) 366 WP_000216431.1 Asp23/Gls24 family envelope stress response protein -
  AAFQ93_RS01125 (AAFQ93_01125) rpmB 237558..237746 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  AAFQ93_RS01130 (AAFQ93_01130) - 237853..238527 (-) 675 WP_223140272.1 LiaF transmembrane domain-containing protein -
  AAFQ93_RS01135 (AAFQ93_01135) - 238532..238978 (-) 447 WP_006155797.1 LytTR family DNA-binding domain-containing protein -
  AAFQ93_RS01140 (AAFQ93_01140) - 239097..239600 (-) 504 WP_223140273.1 phosphatase PAP2 family protein -
  AAFQ93_RS01145 (AAFQ93_01145) rcrQ 239699..241459 (-) 1761 WP_223140274.1 ABC transporter ATP-binding protein Regulator
  AAFQ93_RS01150 (AAFQ93_01150) rcrP 241449..243218 (-) 1770 WP_375555394.1 ABC transporter ATP-binding protein Regulator
  AAFQ93_RS01155 (AAFQ93_01155) - 243202..243663 (-) 462 WP_223140276.1 MarR family winged helix-turn-helix transcriptional regulator -
  AAFQ93_RS01160 (AAFQ93_01160) - 243871..244545 (+) 675 WP_375555395.1 CD20-like domain-containing protein -
  AAFQ93_RS01165 (AAFQ93_01165) - 244768..245484 (-) 717 WP_223140278.1 YebC/PmpR family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64516.15 Da        Isoelectric Point: 5.1198

>NTDB_id=989142 AAFQ93_RS01145 WP_223140274.1 239699..241459(-) (rcrQ) [Streptococcus nidrosiense strain SO-23-1]
MENKKMSVWKQYKPFLAGLQLPLLVAVVAAVCSSIITVYGPTKIKEITNLISDGLATEIDLVAVSSIASFLAVLYVLGAI
LNYTQAYIFSTSIQHFSKRMRTAIAEKINRLPLAYFDRHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSASFLLIAVLITM
FGMNWILALVTVVSTLVGFAAVSVIMAKSQGYFKAQQNNLAAVNGYVEEMYSGHNVVTSYNAVDTTKETFAGLNQNLHDS
IWKSQFISGIMMPAMFFVGNFSYVLVVIVGAALALEGHISIGIIVAFMVYVRTFSQPLSQIAQGITSLQQASAAMTRVFE
FLGEAEMEDESHKERQLTDMKGQVVFDRVAFGYTPEKTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKNMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQTGISEERVIEAAKAVGIHHFITTLPDGYDTVLDDTVTL
SVGQKQLLTIARALFKDSPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HEELMAQGGFYADLYNSQFTEDEVEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=989142 AAFQ93_RS01145 WP_223140274.1 239699..241459(-) (rcrQ) [Streptococcus nidrosiense strain SO-23-1]
ATGGAAAATAAGAAGATGTCCGTTTGGAAACAATACAAACCTTTTCTAGCAGGTCTCCAACTTCCTCTACTAGTTGCAGT
TGTGGCTGCTGTATGTTCAAGTATTATCACTGTTTATGGACCAACTAAGATCAAAGAAATCACCAACTTGATTTCAGATG
GTTTGGCTACAGAAATCGATTTGGTAGCTGTGTCTAGCATCGCCAGCTTTTTGGCTGTTTTGTATGTACTTGGTGCCATT
CTCAACTATACGCAAGCCTATATTTTTTCAACGAGTATCCAACATTTTTCAAAACGAATGCGGACGGCCATTGCTGAAAA
AATTAACCGTCTGCCACTTGCTTATTTTGACCGTCATTCTCAAGGAGACACCCTTTCTCGTGTGACCAATGACGTCGATA
CGGCGGCTCAGTCCCTCAACCAAAGTCTGGGAACGGTTCTCTCAGCTAGCTTTCTACTGATTGCTGTTTTGATTACCATG
TTTGGCATGAACTGGATTTTGGCATTGGTAACAGTTGTTTCAACCCTTGTAGGTTTTGCTGCGGTTTCAGTGATTATGGC
TAAGTCACAGGGTTACTTTAAAGCCCAGCAAAACAACCTAGCAGCTGTAAACGGTTATGTAGAAGAAATGTACTCTGGCC
ACAATGTGGTGACCAGCTATAATGCTGTGGATACCACTAAAGAAACATTCGCAGGCTTGAACCAGAATCTACATGATAGT
ATCTGGAAATCTCAGTTTATTTCAGGGATCATGATGCCCGCTATGTTCTTTGTCGGAAACTTTAGCTATGTTTTGGTTGT
TATCGTCGGTGCTGCCTTGGCTCTTGAAGGCCATATCAGTATTGGGATTATCGTAGCCTTCATGGTTTATGTTCGTACCT
TCTCACAACCCTTATCACAGATTGCACAAGGGATTACCAGCTTACAACAGGCTAGTGCAGCTATGACCCGTGTCTTTGAG
TTTCTAGGAGAAGCTGAGATGGAAGACGAGTCTCATAAGGAAAGACAATTAACCGACATGAAGGGTCAAGTGGTCTTTGA
CAGAGTTGCCTTTGGCTATACTCCTGAAAAAACGATCATTCACGACTTTTCAGCGACAGCTCATGCAGGGCAAAAGGTTG
CTATTGTTGGGCCGACTGGAGCTGGGAAAACTACCATAGTCAATCTCTTGATGAAATTTTATGAGATTGATAAGGGAAGC
ATTCGCATCGATGGTGTGGATACCAAGAATATGAAACGCTCGGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATAC
CTGGCTCTTTGAAGGAACTATTCGAGACAATCTCATTTATAATCAAACTGGGATTAGTGAAGAGCGCGTGATTGAAGCAG
CCAAAGCAGTAGGAATCCACCACTTTATCACAACCTTACCAGATGGCTACGATACTGTTTTGGATGATACAGTGACCTTG
TCAGTCGGGCAGAAACAGCTCTTGACCATCGCTCGTGCCCTTTTCAAAGATTCTCCACTCTTGATTCTGGACGAAGCGAC
CTCTTCAGTCGATACACGTACAGAGGAGTTGATTCAGAAAGCCATGGACCGTTTGATGGAGGGACGCACATCCTTTGTTA
TTGCCCACCGCTTGTCAACGATCCGCAATGCTGACTTGATTCTGGTCATGAAGGACGGAAACATCATCGAGCAAGGCAAT
CATGAAGAGCTTATGGCTCAAGGTGGTTTCTATGCTGACCTCTACAATAGTCAATTTACAGAAGATGAAGTAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.838

99.317

0.664

Multiple sequence alignment