Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AAHH81_RS02390 Genome accession   NZ_CP152418
Coordinates   465080..465811 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20234287     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 460080..470811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHH81_RS02365 (AAHH81_02360) dnaK 460206..462029 (+) 1824 WP_061813610.1 molecular chaperone DnaK -
  AAHH81_RS02370 (AAHH81_02365) - 462031..462387 (+) 357 WP_061813611.1 hypothetical protein -
  AAHH81_RS02375 (AAHH81_02370) dnaJ 462789..463925 (+) 1137 WP_061813612.1 molecular chaperone DnaJ -
  AAHH81_RS02380 (AAHH81_02375) - 464305..464592 (-) 288 WP_000777753.1 hypothetical protein -
  AAHH81_RS02385 (AAHH81_02380) - 464602..465012 (-) 411 WP_001278301.1 HIT family protein -
  AAHH81_RS02390 (AAHH81_02385) pptA 465080..465811 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  AAHH81_RS02395 (AAHH81_02390) - 465808..466857 (+) 1050 WP_061753515.1 ABC transporter permease -
  AAHH81_RS02400 (AAHH81_02395) - 467025..467354 (-) 330 WP_061753516.1 hypothetical protein -
  AAHH81_RS02405 (AAHH81_02400) - 467630..467968 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  AAHH81_RS02410 (AAHH81_02405) comE/blpR 467996..468688 (+) 693 WP_369917891.1 response regulator transcription factor Regulator
  AAHH81_RS02415 (AAHH81_02410) - 468702..470042 (+) 1341 WP_001017622.1 sensor histidine kinase -
  AAHH81_RS02420 (AAHH81_02415) blpC 470084..470239 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=989055 AAHH81_RS02390 WP_000889923.1 465080..465811(+) (pptA) [Streptococcus pneumoniae strain 20234287]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=989055 AAHH81_RS02390 WP_000889923.1 465080..465811(+) (pptA) [Streptococcus pneumoniae strain 20234287]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment