Detailed information NTG0988995

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACODQR_RS14025
• Genome accession: NZ_CP184740
• Coordinates: 2840510..2841502 (-)
• Length: 330 a.a.
• NCBI ID: WP_420536503.1
• Uniprot ID: -
• Organism: Escherichia coli strain LTE950
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2835510..2846502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACODQR_RS14005 (ACODQR_14005)	otnK	2836286..2837452 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ACODQR_RS14010 (ACODQR_14010)	ygbL	2837544..2838182 (+)	639	WP_001278994.1	aldolase	-
ACODQR_RS14015 (ACODQR_14015)	ygbM	2838187..2838963 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACODQR_RS14020 (ACODQR_14020)	ygbN	2839052..2840416 (+)	1365	WP_000104441.1	GntP family transporter	-
ACODQR_RS14025 (ACODQR_14025)	rpoS	2840510..2841502 (-)	993	WP_420536503.1	RNA polymerase sigma factor RpoS	Regulator
ACODQR_RS14030 (ACODQR_14030)	nlpD	2841565..2842659 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACODQR_RS14035 (ACODQR_14035)	pcm	2842844..2843470 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACODQR_RS14040 (ACODQR_14040)	surE	2843464..2844225 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACODQR_RS14045 (ACODQR_14045)	truD	2844206..2845255 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACODQR_RS14050 (ACODQR_14050)	ispF	2845252..2845731 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACODQR_RS14055 (ACODQR_14055)	ispD	2845731..2846441 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38001.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=988995 ACODQR_RS14025 WP_420536503.1 2840510..2841502(-) (rpoS) [Escherichia coli strain LTE950]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDEGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=988995 ACODQR_RS14025 WP_420536503.1 2840510..2841502(-) (rpoS) [Escherichia coli strain LTE950]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGAAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712