Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD1   Type   Regulator
Locus tag   ACNR93_RS08300 Genome accession   NZ_CP184736
Coordinates   1681309..1682631 (-) Length   440 a.a.
NCBI ID   WP_420543560.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676309..1687631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS08270 (ACNR93_08270) comD/comD3 1677063..1678145 (-) 1083 WP_420543556.1 sensor histidine kinase Regulator
  ACNR93_RS08275 (ACNR93_08275) comD/comD3 1678438..1679832 (-) 1395 WP_420543557.1 sensor histidine kinase Regulator
  ACNR93_RS08280 (ACNR93_08280) - 1679833..1680030 (-) 198 WP_126438119.1 hypothetical protein -
  ACNR93_RS08285 (ACNR93_08285) - 1680191..1680484 (-) 294 WP_039697859.1 bacteriocin immunity protein -
  ACNR93_RS08290 (ACNR93_08290) - 1680514..1680819 (-) 306 WP_420543558.1 bacteriocin immunity protein -
  ACNR93_RS08295 (ACNR93_08295) - 1680839..1681126 (-) 288 WP_420543559.1 DUF3884 family protein -
  ACNR93_RS08300 (ACNR93_08300) comD/comD1 1681309..1682631 (-) 1323 WP_420543560.1 sensor histidine kinase Regulator
  ACNR93_RS08305 (ACNR93_08305) comC/comC1 1682945..1683097 (+) 153 WP_420543561.1 hypothetical protein Regulator
  ACNR93_RS08310 (ACNR93_08310) comD/comD1 1683113..1684387 (-) 1275 WP_420543562.1 sensor histidine kinase Regulator
  ACNR93_RS08315 (ACNR93_08315) comE/comE1 1684446..1685177 (-) 732 WP_420543563.1 response regulator transcription factor Regulator
  ACNR93_RS08320 (ACNR93_08320) - 1685536..1685781 (-) 246 WP_074483823.1 DUF3884 family protein -
  ACNR93_RS08325 (ACNR93_08325) - 1685857..1686081 (-) 225 WP_094140014.1 helix-turn-helix domain-containing protein -
  ACNR93_RS08330 (ACNR93_08330) - 1686071..1687072 (-) 1002 WP_420543564.1 thioredoxin fold domain-containing protein -
  ACNR93_RS08335 (ACNR93_08335) - 1687233..1687535 (-) 303 WP_039697854.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 50871.47 Da        Isoelectric Point: 5.4892

>NTDB_id=988933 ACNR93_RS08300 WP_420543560.1 1681309..1682631(-) (comD/comD1) [Streptococcus equinus strain NM-2-29]
MIKALLIYFASQLVYYPVIMTIFANVRGEKLKLREIVTISLSFFVIDITSFPTIVGRILILFLLSYLNRKDLPLSLHMFN
GSFPWVIDSIIIRTISLFVLPIFGLDYIGLSKNDILFIVVQLSVLLFYFLSIKISKIDFKTFIDISETKLLRKKLVFTDI
TMIFYYVVIEYLTAVDFEEKVPTLIYRQWLVFLYFIFFISMLVYMNRTYQNKLEKEIASAREQELRSLSAYSKQIEGLYE
ELRAFRHDYANILASLKEGIEQNDMGIVRHIYDSVLTDSADFIQNSKFNIGRLANIDDDAIKSLLSAKFLEAEANHIEVN
LEVKDKIGEPAMPLLDYIRILSILCDNAIEAALEAENPAITIACFYQDDEYVLIVDNTTKEEQVPVDLIYQKDYSSKGHG
RGIGLTTIHQMMRKYPNLTVETDSVAHHFCQTIRIKNTLN

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=988933 ACNR93_RS08300 WP_420543560.1 1681309..1682631(-) (comD/comD1) [Streptococcus equinus strain NM-2-29]
ATGATAAAAGCGCTTTTGATTTATTTTGCTTCACAGCTTGTTTATTATCCTGTTATCATGACAATTTTTGCGAATGTAAG
AGGAGAAAAGCTAAAATTACGGGAAATTGTAACGATATCATTGTCATTTTTCGTTATTGATATTACATCATTTCCTACTA
TCGTGGGAAGAATATTAATATTATTTTTATTATCATATCTCAATAGAAAAGACTTACCGTTATCTTTACATATGTTCAAT
GGTAGCTTTCCATGGGTTATTGATAGCATTATTATTAGGACTATTAGTCTTTTTGTTCTTCCAATATTCGGATTAGATTA
TATTGGTCTGAGTAAAAATGATATATTGTTTATCGTTGTACAATTGTCTGTGTTATTGTTTTACTTCTTAAGCATCAAAA
TATCAAAAATCGATTTTAAAACTTTTATTGATATCAGTGAAACAAAATTATTACGTAAAAAATTAGTTTTTACAGATATT
ACAATGATTTTTTATTATGTTGTGATTGAATATTTGACTGCAGTAGATTTTGAAGAGAAAGTGCCAACTTTAATCTATCG
ACAATGGTTAGTTTTTTTATATTTTATATTTTTCATTAGTATGCTTGTTTACATGAACCGCACTTACCAAAATAAGCTTG
AAAAGGAGATTGCTTCAGCGCGTGAGCAAGAGCTGCGTTCGCTGTCTGCTTATAGTAAACAGATTGAGGGCTTGTATGAA
GAATTACGAGCTTTCAGACATGATTATGCCAATATTTTAGCCAGTTTGAAAGAGGGCATTGAGCAGAATGATATGGGGAT
TGTTCGACATATTTATGATTCTGTGTTGACGGATTCAGCTGATTTTATTCAAAATAGTAAGTTTAACATTGGGCGTTTAG
CTAATATCGATGATGATGCGATAAAAAGTTTATTGTCTGCTAAATTTTTAGAAGCTGAGGCTAATCATATTGAGGTCAAT
CTTGAAGTTAAAGATAAGATTGGTGAACCCGCAATGCCACTTTTGGATTACATTCGTATACTTTCTATTTTATGTGATAA
TGCGATTGAAGCTGCGCTTGAAGCAGAAAATCCAGCTATTACGATCGCTTGTTTTTATCAAGATGATGAGTATGTGTTAA
TTGTGGATAATACGACTAAAGAGGAGCAGGTTCCTGTTGATTTGATTTATCAAAAAGATTATTCAAGTAAAGGACATGGT
CGAGGTATTGGTCTTACAACGATTCATCAGATGATGCGAAAATATCCAAATCTCACGGTTGAAACGGATAGTGTGGCTCA
TCATTTCTGTCAGACGATACGTATTAAAAATACGCTAAACTAG

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(335-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD1 Streptococcus equinus JB1

84.979

52.955

0.45