Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AAFF19_RS18960 Genome accession   NZ_CP152407
Coordinates   4064089..4064487 (-) Length   132 a.a.
NCBI ID   WP_034692846.1    Uniprot ID   A0AAW4I517
Organism   Acidovorax sp. FHTAMBA     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4059089..4069487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFF19_RS18945 (AAFF19_18945) - 4060880..4063159 (-) 2280 WP_182118801.1 methyl-accepting chemotaxis protein -
  AAFF19_RS18950 (AAFF19_18950) - 4063181..4063708 (-) 528 WP_342720783.1 chemotaxis protein CheW -
  AAFF19_RS18955 (AAFF19_18955) - 4063724..4064089 (-) 366 WP_005796104.1 response regulator -
  AAFF19_RS18960 (AAFF19_18960) pilG 4064089..4064487 (-) 399 WP_034692846.1 response regulator Regulator
  AAFF19_RS18965 (AAFF19_18965) - 4064549..4064722 (-) 174 WP_008903269.1 rubredoxin -
  AAFF19_RS18970 (AAFF19_18970) - 4064817..4065776 (+) 960 WP_342720784.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AAFF19_RS18975 (AAFF19_18975) hemL 4065760..4067070 (+) 1311 WP_182118803.1 glutamate-1-semialdehyde 2,1-aminomutase -
  AAFF19_RS18980 (AAFF19_18980) - 4067239..4068225 (-) 987 WP_182118804.1 IS5 family transposase -
  AAFF19_RS18985 (AAFF19_18985) - 4068340..4069119 (-) 780 WP_182118805.1 IclR family transcriptional regulator C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14596.79 Da        Isoelectric Point: 6.9234

>NTDB_id=988925 AAFF19_RS18960 WP_034692846.1 4064089..4064487(-) (pilG) [Acidovorax sp. FHTAMBA]
MTTTGASFKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
DTPVVMLSSKDGVFDKARGRMVGCQEYLTKPFTKDQLLQAVQQFGNAQQGAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=988925 AAFF19_RS18960 WP_034692846.1 4064089..4064487(-) (pilG) [Acidovorax sp. FHTAMBA]
TTGACTACAACAGGCGCATCTTTCAAAGTGCTCGTGGTGGATGACAGCAACACCATCCGTCGAAGCGCCGAGATTTTTCT
CAAGCAGGGGGGGCACGAAGTCTTGTTGGCCGACGACGGCTTTGATGCTTTGGCCAAAGTCAATGATTACCAGCCACAGC
TGATTTTCTGCGACATCCTCATGCCCAAGCTCGATGGGTACCAGACCTGCGCCATCATCAAGCGCAACGCCCGTTTTGCG
GATACTCCGGTGGTAATGCTGTCCTCCAAGGATGGCGTTTTCGACAAGGCGCGCGGGCGCATGGTCGGCTGCCAGGAATA
TCTCACCAAACCGTTTACCAAAGACCAGCTGTTGCAAGCGGTGCAGCAGTTTGGCAATGCCCAACAAGGAGCGATGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.265

88.636

0.508

Multiple sequence alignment