Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAFF19_RS02620 Genome accession   NZ_CP152407
Coordinates   575560..576939 (+) Length   459 a.a.
NCBI ID   WP_008903653.1    Uniprot ID   H0BU88
Organism   Acidovorax sp. FHTAMBA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 570560..581939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFF19_RS02600 (AAFF19_02600) - 571241..572821 (+) 1581 WP_342721249.1 ABC transporter substrate-binding protein -
  AAFF19_RS02605 (AAFF19_02605) - 572897..573520 (-) 624 WP_342721250.1 glutathione S-transferase family protein -
  AAFF19_RS02610 (AAFF19_02610) - 573594..574571 (-) 978 WP_182121047.1 2-dehydropantoate 2-reductase -
  AAFF19_RS02615 (AAFF19_02615) hpaI 574614..575444 (-) 831 WP_182121046.1 4-hydroxy-2-oxoheptanedioate aldolase -
  AAFF19_RS02620 (AAFF19_02620) radA 575560..576939 (+) 1380 WP_008903653.1 DNA repair protein RadA Machinery gene
  AAFF19_RS02625 (AAFF19_02625) - 576989..577423 (+) 435 WP_008903652.1 hypothetical protein -
  AAFF19_RS02630 (AAFF19_02630) - 577463..578401 (+) 939 WP_342721251.1 branched-chain amino acid transaminase -
  AAFF19_RS02635 (AAFF19_02635) - 578407..578613 (+) 207 WP_008903650.1 zinc-finger domain-containing protein -
  AAFF19_RS02640 (AAFF19_02640) - 578607..579563 (-) 957 WP_008903649.1 capsular polysaccharide synthesis protein -
  AAFF19_RS02645 (AAFF19_02645) - 579636..580727 (+) 1092 WP_342721252.1 glycosyltransferase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48051.52 Da        Isoelectric Point: 7.1208

>NTDB_id=988912 AAFF19_RS02620 WP_008903653.1 575560..576939(+) (radA) [Acidovorax sp. FHTAMBA]
MAKDKTTFTCTECGGTSPRWLGKCPSCGAWNTLIEQVAEAGPGKNRLSTPQGYAGLANAQPVLPLAAIEAQDVARTPSGI
DELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALQRAGLPTLYVTGEESGAQVALRSRRLGIDGSQVQLLAEIQLE
KILATVEATQPAVVVIDSIQTTYSDQLTSAPGSVAQVRECAAHLTRMAKGTGIAVILVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSEPVPGSCVMVTLEGTRPLLVEIQALVDS
GGPSPRRLSVGLDKDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKALPRGFLAFGEVG
LAGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGLTIHAVERVEEAMNVVRGL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=988912 AAFF19_RS02620 WP_008903653.1 575560..576939(+) (radA) [Acidovorax sp. FHTAMBA]
ATGGCCAAAGACAAAACCACGTTCACCTGCACCGAATGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGTCCTG
CGGCGCCTGGAACACGCTGATCGAACAGGTGGCCGAGGCCGGGCCGGGCAAGAACCGCCTGAGCACGCCGCAAGGCTACG
CGGGCCTGGCCAACGCGCAGCCCGTCCTGCCGCTGGCGGCCATCGAGGCCCAGGACGTGGCCCGCACCCCCAGCGGCATC
GACGAGCTGGACCGCGTGCTGGGCGGAGGCATCGTGGAAGGGGGTGTGGTGCTCATCGGCGGTGACCCGGGCATTGGCAA
ATCGACCCTGCTGCTGCAGGCCATGGACGCGCTGCAGCGCGCAGGCCTGCCAACTTTGTACGTGACGGGTGAGGAGAGCG
GCGCCCAGGTGGCGCTGCGCTCGCGGCGCTTGGGCATCGACGGCAGCCAGGTGCAGCTTCTGGCCGAAATCCAGCTCGAA
AAGATTCTGGCCACGGTCGAGGCCACGCAGCCTGCCGTGGTGGTCATTGACTCCATCCAGACCACCTATTCCGACCAGCT
CACCAGCGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCGCACCTTACGCGCATGGCCAAGGGCACGGGCATCG
CGGTGATCCTGGTGGGCCATGTGACCAAGGAGGGCGCGCTGGCCGGCCCACGCGTGCTGGAGCACATGGTGGACACCGTG
CTGTACTTCGAGGGCGACACGCACAGCCAGTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCGGTGAATGAGAT
CGGCGTGTTCGCCATGACCGAAAAGGGCCTCAAGGGCGTGAGCAACCCGAGCGCCATCTTCCTCTCCCAGCACAGCGAGC
CCGTGCCCGGCAGCTGCGTGATGGTGACGCTGGAGGGCACACGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGACAGT
GGCGGCCCCAGCCCCCGGCGCCTGTCGGTGGGCCTGGACAAGGACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCA
CGCGGGCGTGGCCTGCATGGACCAGGACGTGTTTGTGAACGCGGTGGGCGGCGTGCGCATCAGCGAGCCGGCGGCCGACC
TGGCGGTGATGTTGTCGATCACCTCCAGCCTGCGCGGCAAGGCGCTGCCGCGCGGCTTTCTGGCGTTTGGCGAGGTGGGG
CTGGCCGGTGAGGTGCGGCCCGCTCCCCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTGGGTTTCAGTGTGGCCGT
GGTGCCCAAGGCCAATGCGCCCAAGAAACCCATTGAGGGGCTGACCATCCACGCGGTGGAGCGGGTGGAAGAAGCCATGA
ACGTGGTACGGGGCTTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H0BU88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.156

100

0.484
  radA Streptococcus mitis NCTC 12261

46.696

98.911

0.462
  radA Streptococcus pneumoniae Rx1

48.492

93.9

0.455
  radA Streptococcus pneumoniae D39

48.492

93.9

0.455
  radA Streptococcus pneumoniae R6

48.492

93.9

0.455
  radA Streptococcus pneumoniae TIGR4

48.492

93.9

0.455
  radA Streptococcus mitis SK321

48.492

93.9

0.455

Multiple sequence alignment