Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAGF34_RS06165 Genome accession   NZ_CP152376
Coordinates   1297666..1299033 (-) Length   455 a.a.
NCBI ID   WP_342619736.1    Uniprot ID   -
Organism   Rhodoferax sp. GW822-FHT02A01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292666..1304033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGF34_RS06135 (AAGF34_06135) - 1293625..1294965 (-) 1341 WP_342619730.1 ATP-binding protein -
  AAGF34_RS06140 (AAGF34_06140) - 1294962..1295633 (-) 672 WP_342619731.1 winged helix-turn-helix domain-containing protein -
  AAGF34_RS06145 (AAGF34_06145) - 1295640..1296362 (-) 723 WP_342619732.1 cytochrome b/b6 domain-containing protein -
  AAGF34_RS06150 (AAGF34_06150) - 1296359..1296826 (-) 468 WP_342619733.1 diheme cytochrome c -
  AAGF34_RS06155 (AAGF34_06155) - 1296844..1297248 (-) 405 WP_342619734.1 DUF1924 domain-containing protein -
  AAGF34_RS06160 (AAGF34_06160) - 1297296..1297655 (-) 360 WP_342619735.1 hypothetical protein -
  AAGF34_RS06165 (AAGF34_06165) radA 1297666..1299033 (-) 1368 WP_342619736.1 DNA repair protein RadA Machinery gene
  AAGF34_RS06170 (AAGF34_06170) - 1299132..1300373 (-) 1242 WP_342619737.1 hypothetical protein -
  AAGF34_RS06175 (AAGF34_06175) - 1300479..1301690 (-) 1212 WP_342619738.1 hypothetical protein -
  AAGF34_RS06180 (AAGF34_06180) alr 1301687..1302781 (-) 1095 WP_342619739.1 alanine racemase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 47915.23 Da        Isoelectric Point: 7.4655

>NTDB_id=988742 AAGF34_RS06165 WP_342619736.1 1297666..1299033(-) (radA) [Rhodoferax sp. GW822-FHT02A01]
MAKEKSIYTCNECGGTSPKWLGKCPHCNAWNTLIESVAGSDAPAKNRFASLAKTADVAVLADIEASDVERTPTGHEELDR
VLGGGMVEGGVVLIGGDPGIGKSTLLLQALDSLQRQGKSTLYVTGEESGAQVALRSRRLGLDKSQVKVLAEIQLEKILAT
LTAHSPDVAVIDSIQTVYSEQLTSAPGSVAQVRECAAHLTRAAKSSGTAIVLVGHVTKDGALAGPRVLEHMVDTVLYFEG
DTHSQFRLVRAIKNRFGAVNEMGVFAMTEKGLKGVSNPSAIFLSQHAEPVPGSCVMVTLEGTRPLLVEIQALVDSGGPSP
RRLSVGLDKDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKPLPKGFIAFGEVGLAGEV
RPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGLTIHAVERVEEAMQVVRSLA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=988742 AAGF34_RS06165 WP_342619736.1 1297666..1299033(-) (radA) [Rhodoferax sp. GW822-FHT02A01]
ATGGCCAAAGAGAAAAGCATCTACACCTGCAACGAGTGCGGCGGCACCAGTCCCAAGTGGCTGGGCAAGTGCCCGCATTG
CAATGCCTGGAACACCCTGATCGAATCCGTCGCCGGCAGCGACGCACCGGCCAAGAACCGCTTTGCATCCCTGGCCAAGA
CCGCCGATGTGGCGGTGCTGGCAGACATCGAAGCCAGCGATGTGGAGCGCACACCCACCGGTCACGAAGAACTGGACCGC
GTGCTGGGCGGTGGCATGGTCGAAGGCGGTGTGGTGCTCATTGGCGGCGACCCCGGTATCGGCAAGTCCACGCTACTGTT
GCAGGCGCTGGATTCGCTGCAGCGCCAGGGCAAGAGTACCTTGTATGTCACGGGTGAAGAGAGCGGCGCACAGGTGGCGC
TGCGCTCGCGGCGTCTGGGCTTGGACAAATCGCAGGTCAAGGTACTGGCCGAAATCCAGCTGGAAAAAATCCTCGCCACC
CTGACCGCGCACAGCCCCGATGTGGCGGTGATCGACTCGATTCAAACTGTGTACTCGGAGCAGCTCACCAGCGCACCGGG
TTCGGTAGCGCAGGTGCGCGAATGCGCGGCCCACCTCACGCGTGCGGCCAAGTCCAGCGGCACGGCCATCGTGCTGGTGG
GCCACGTCACCAAGGACGGTGCCCTGGCTGGCCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTGTATTTCGAGGGC
GACACGCACAGCCAGTTCCGTCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCAGTCAATGAGATGGGCGTGTTTGCCAT
GACGGAAAAAGGCCTCAAGGGCGTGAGCAACCCCAGCGCCATTTTTCTGAGTCAGCATGCCGAGCCCGTGCCCGGCAGCT
GCGTCATGGTCACGCTCGAAGGCACGCGCCCCTTGCTGGTGGAAATCCAGGCGCTGGTGGACAGCGGTGGCCCGTCGCCG
CGGCGTCTCTCGGTAGGCCTGGACAAGGACCGATTGGCCATGCTGTTGGCCGTGTTGCACCGCCATGCGGGCGTGGCCTG
CATGGATCAGGATGTGTTTGTGAATGCGGTGGGCGGTGTGCGCATCAGCGAGCCCGCTGCCGATCTGGCGGTCATGCTTT
CCATCACGTCGTCGCTGCGCGGCAAGCCCTTGCCCAAGGGCTTCATCGCCTTTGGTGAGGTGGGTCTGGCCGGTGAGGTG
CGCCCCGCGCCGCGCGGGCAGGAGCGCCTCAAGGAGGCCGCTAAGCTGGGCTTCAGCGTGGCCGTGGTGCCCAAGGCCAA
TGCACCCAAGAAACCCATCGAGGGGCTGACCATCCATGCGGTGGAGCGGGTCGAAGAGGCCATGCAGGTGGTGCGCTCAC
TGGCGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.67

100

0.497
  radA Streptococcus mitis NCTC 12261

46.341

99.121

0.459
  radA Streptococcus pneumoniae D39

47.166

96.923

0.457
  radA Streptococcus pneumoniae TIGR4

47.166

96.923

0.457
  radA Streptococcus pneumoniae R6

47.166

96.923

0.457
  radA Streptococcus pneumoniae Rx1

47.166

96.923

0.457
  radA Streptococcus mitis SK321

48.131

94.066

0.453

Multiple sequence alignment