Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACAK36_RS11670 Genome accession   NZ_AP031585
Coordinates   2393801..2395066 (-) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain JUNP543     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2388801..2400066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK36_RS11640 (JUNP543_2328) pncA 2389023..2389667 (-) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -
  ACAK36_RS11645 (JUNP543_2329) dapA 2389997..2390890 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACAK36_RS11650 (JUNP543_2330) - 2390906..2391508 (+) 603 WP_001177091.1 hypothetical protein -
  ACAK36_RS11655 (JUNP543_2331) purC 2391546..2392265 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ACAK36_RS11660 (JUNP543_2332) - 2392458..2392661 (+) 204 WP_000418559.1 hypothetical protein -
  ACAK36_RS11665 (JUNP543_2333) - 2392947..2393786 (+) 840 WP_049581191.1 formate/nitrite transporter family protein -
  ACAK36_RS11670 (JUNP543_2334) rarA 2393801..2395066 (-) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  ACAK36_RS11675 (JUNP543_2335) - 2395172..2396344 (-) 1173 WP_049581193.1 PQQ-dependent sugar dehydrogenase -
  ACAK36_RS11680 (JUNP543_2336) - 2396454..2396912 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  ACAK36_RS11685 (JUNP543_2337) - 2397107..2397265 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  ACAK36_RS11690 (JUNP543_2338) - 2397437..2398174 (+) 738 WP_049581196.1 dienelactone hydrolase family protein -
  ACAK36_RS11695 (JUNP543_2339) - 2398360..2398722 (+) 363 WP_000130110.1 HIT family protein -
  ACAK36_RS11700 (JUNP543_2340) mutY 2398863..2399897 (+) 1035 WP_001113875.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=98870 ACAK36_RS11670 WP_001285409.1 2393801..2395066(-) (rarA) [Acinetobacter baumannii strain JUNP543]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=98870 ACAK36_RS11670 WP_001285409.1 2393801..2395066(-) (rarA) [Acinetobacter baumannii strain JUNP543]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACATTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATTAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCGCTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGGATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTACAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387

Multiple sequence alignment