Detailed information NTG0988677

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WN937_RS13760
• Genome accession: NZ_CP152363
• Coordinates: 2909864..2910853 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain vp-HL-201910
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2904864..2915853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WN937_RS13745 (WN937_13745)	recA	2905413..2906456 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
WN937_RS13750 (WN937_13750)	pncC	2906657..2907139 (-)	483	WP_025505116.1	nicotinamide-nucleotide amidase	-
WN937_RS13755 (WN937_13755)	mutS	2907224..2909785 (+)	2562	WP_069536392.1	DNA mismatch repair protein MutS	-
WN937_RS13760 (WN937_13760)	rpoS	2909864..2910853 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
WN937_RS13765 (WN937_13765)	-	2910934..2911857 (-)	924	WP_069536393.1	peptidoglycan DD-metalloendopeptidase family protein	-
WN937_RS13770 (WN937_13770)	-	2911872..2912498 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
WN937_RS13775 (WN937_13775)	surE	2912498..2913274 (-)	777	WP_042762073.1	5'/3'-nucleotidase SurE	-
WN937_RS13780 (WN937_13780)	truD	2913274..2914317 (-)	1044	WP_069536394.1	tRNA pseudouridine(13) synthase TruD	-
WN937_RS13785 (WN937_13785)	ispF	2914364..2914840 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
WN937_RS13790 (WN937_13790)	ispD	2914858..2915562 (-)	705	WP_069536395.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
WN937_RS13795 (WN937_13795)	ftsB	2915564..2915845 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=988677 WN937_RS13760 WP_005478537.1 2909864..2910853(-) (rpoS) [Vibrio parahaemolyticus strain vp-HL-201910]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=988677 WN937_RS13760 WP_005478537.1 2909864..2910853(-) (rpoS) [Vibrio parahaemolyticus strain vp-HL-201910]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851