Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   WN937_RS13630 Genome accession   NZ_CP152363
Coordinates   2887750..2888268 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain vp-HL-201910     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2882750..2893268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN937_RS13605 (WN937_13605) rimM 2882858..2883406 (-) 549 WP_047123098.1 ribosome maturation factor RimM -
  WN937_RS13610 (WN937_13610) rpsP 2883435..2883683 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  WN937_RS13615 (WN937_13615) ffh 2883893..2885275 (-) 1383 WP_005462555.1 signal recognition particle protein -
  WN937_RS13620 (WN937_13620) - 2885488..2886282 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  WN937_RS13625 (WN937_13625) - 2886408..2887688 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  WN937_RS13630 (WN937_13630) luxS 2887750..2888268 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  WN937_RS13635 (WN937_13635) - 2888335..2888940 (-) 606 WP_175423209.1 hypothetical protein -
  WN937_RS13640 (WN937_13640) gshA 2888965..2890533 (-) 1569 WP_029800956.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=988674 WN937_RS13630 WP_005462534.1 2887750..2888268(-) (luxS) [Vibrio parahaemolyticus strain vp-HL-201910]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=988674 WN937_RS13630 WP_005462534.1 2887750..2888268(-) (luxS) [Vibrio parahaemolyticus strain vp-HL-201910]
ATGCCTTTACTCGATAGCTTCACAGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCCAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCTGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment