Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   WN937_RS06295 Genome accession   NZ_CP152363
Coordinates   1360178..1361599 (-) Length   473 a.a.
NCBI ID   WP_069535688.1    Uniprot ID   A0AA47JIN0
Organism   Vibrio parahaemolyticus strain vp-HL-201910     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1355178..1366599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN937_RS06270 (WN937_06270) - 1355742..1356392 (+) 651 WP_005480776.1 thiopurine S-methyltransferase -
  WN937_RS06275 (WN937_06275) purT 1356494..1357669 (-) 1176 WP_029823377.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  WN937_RS06280 (WN937_06280) cdd 1357817..1358704 (-) 888 WP_015296604.1 cytidine deaminase -
  WN937_RS06285 (WN937_06285) - 1359069..1359746 (-) 678 WP_005454891.1 LrgB family protein -
  WN937_RS06290 (WN937_06290) - 1359748..1360122 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  WN937_RS06295 (WN937_06295) sbcB 1360178..1361599 (-) 1422 WP_069535688.1 exodeoxyribonuclease I Machinery gene
  WN937_RS06300 (WN937_06300) - 1361755..1363128 (-) 1374 WP_069535687.1 L-cystine transporter -
  WN937_RS06305 (WN937_06305) - 1363321..1364016 (-) 696 WP_069535686.1 NAD(P)H-binding protein -
  WN937_RS06310 (WN937_06310) cobT 1364700..1365743 (+) 1044 WP_069535685.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  WN937_RS06315 (WN937_06315) - 1365788..1366540 (+) 753 WP_042780724.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54614.96 Da        Isoelectric Point: 5.0409

>NTDB_id=988665 WN937_RS06295 WP_069535688.1 1360178..1361599(-) (sbcB) [Vibrio parahaemolyticus strain vp-HL-201910]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGINRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=988665 WN937_RS06295 WP_069535688.1 1360178..1361599(-) (sbcB) [Vibrio parahaemolyticus strain vp-HL-201910]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGTCTATCCGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTAATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment