Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAC934_RS12980 Genome accession   NZ_CP152362
Coordinates   2528204..2528971 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain LP     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2523204..2533971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS12960 (AAC934_12960) ppsR 2523378..2524190 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  AAC934_RS12965 (AAC934_12965) ccpN 2524216..2524854 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  AAC934_RS12970 (AAC934_12970) glyS 2524987..2527026 (-) 2040 WP_160245077.1 glycine--tRNA ligase subunit beta -
  AAC934_RS12975 (AAC934_12975) glyQ 2527019..2527906 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  AAC934_RS12980 (AAC934_12980) recO 2528204..2528971 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  AAC934_RS12985 (AAC934_12985) yqzL 2529008..2529151 (-) 144 WP_003230053.1 YqzL family protein -
  AAC934_RS12990 (AAC934_12990) era 2529299..2530204 (-) 906 WP_003230051.1 GTPase Era -
  AAC934_RS12995 (AAC934_12995) cdd 2530185..2530595 (-) 411 WP_003230049.1 cytidine deaminase -
  AAC934_RS13000 (AAC934_13000) unpK 2530714..2531085 (-) 372 WP_080529555.1 diacylglycerol kinase family protein -
  AAC934_RS13005 (AAC934_13005) ybeY 2531066..2531539 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  AAC934_RS13010 (AAC934_13010) pgpH 2531540..2533675 (-) 2136 WP_342623020.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=988623 AAC934_RS12980 WP_003230055.1 2528204..2528971(-) (recO) [Bacillus subtilis strain LP]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=988623 AAC934_RS12980 WP_003230055.1 2528204..2528971(-) (recO) [Bacillus subtilis strain LP]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment