Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AAC934_RS12450 Genome accession   NZ_CP152362
Coordinates   2438305..2439108 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain LP     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2433305..2444108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS12425 (AAC934_12425) glpQ 2434443..2435174 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  AAC934_RS12430 (AAC934_12430) yqiI 2435253..2435873 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  AAC934_RS12435 (AAC934_12435) - 2435893..2436189 (-) 297 WP_014480225.1 hypothetical protein -
  AAC934_RS12440 (AAC934_12440) - 2436497..2436649 (+) 153 WP_014480226.1 hypothetical protein -
  AAC934_RS12445 (AAC934_12445) yqiG 2436722..2437840 (+) 1119 WP_131227606.1 NADH-dependent flavin oxidoreductase -
  AAC934_RS12450 (AAC934_12450) spo0A 2438305..2439108 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  AAC934_RS12455 (AAC934_12455) spoIVB 2439384..2440664 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  AAC934_RS12460 (AAC934_12460) recN 2440839..2442569 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  AAC934_RS12465 (AAC934_12465) argR 2442606..2443055 (-) 450 WP_003230265.1 arginine repressor ArgR -
  AAC934_RS12470 (AAC934_12470) yqxC 2443153..2443998 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=988612 AAC934_RS12450 WP_003226427.1 2438305..2439108(-) (spo0A) [Bacillus subtilis strain LP]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=988612 AAC934_RS12450 WP_003226427.1 2438305..2439108(-) (spo0A) [Bacillus subtilis strain LP]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment