Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAC934_RS11410 Genome accession   NZ_CP152362
Coordinates   2236116..2236736 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain LP     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2231116..2241736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS11370 (AAC934_11370) ypqE 2232245..2232751 (-) 507 WP_038428153.1 PTS glucose transporter subunit IIA -
  AAC934_RS11375 (AAC934_11375) ypqA 2232889..2233308 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  AAC934_RS11380 (AAC934_11380) yppG 2233329..2233706 (-) 378 WP_015251832.1 YppG family protein -
  AAC934_RS11385 (AAC934_11385) yppF 2233894..2234082 (+) 189 WP_003230690.1 YppF family protein -
  AAC934_RS11390 (AAC934_11390) yppE 2234124..2234495 (-) 372 WP_003246080.1 YppE family protein -
  AAC934_RS11395 (AAC934_11395) yppD 2234541..2234786 (-) 246 WP_004398488.1 YppD family protein -
  AAC934_RS11400 (AAC934_11400) sspM 2234984..2235088 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AAC934_RS11405 (AAC934_11405) yppC 2235113..2236075 (-) 963 WP_128993051.1 DUF2515 domain-containing protein -
  AAC934_RS11410 (AAC934_11410) recU 2236116..2236736 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  AAC934_RS11415 (AAC934_11415) ponA 2236758..2239508 (+) 2751 WP_317680636.1 PBP1A family penicillin-binding protein -
  AAC934_RS11420 (AAC934_11420) ypoC 2239584..2240078 (-) 495 WP_009967579.1 YpoC family protein -
  AAC934_RS11425 (AAC934_11425) nth 2240075..2240734 (-) 660 WP_009967580.1 endonuclease III -
  AAC934_RS11430 (AAC934_11430) dnaD 2240753..2241451 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=988611 AAC934_RS11410 WP_004399067.1 2236116..2236736(+) (recU) [Bacillus subtilis strain LP]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=988611 AAC934_RS11410 WP_004399067.1 2236116..2236736(+) (recU) [Bacillus subtilis strain LP]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment