Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AAC934_RS05625 Genome accession   NZ_CP152362
Coordinates   1083997..1084575 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain LP     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078997..1089575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS05605 (AAC934_05605) hemAT 1079508..1080806 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  AAC934_RS05610 (AAC934_05610) yhfW 1080945..1082474 (-) 1530 WP_342624996.1 FAD-dependent oxidoreductase -
  AAC934_RS05615 (AAC934_05615) yhxC 1082586..1083443 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  AAC934_RS05620 (AAC934_05620) yhzC 1083471..1083704 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  AAC934_RS05625 (AAC934_05625) comK 1083997..1084575 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  AAC934_RS05630 (AAC934_05630) yhxD 1084622..1085521 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  AAC934_RS05635 (AAC934_05635) yhjA 1085738..1086007 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  AAC934_RS05640 (AAC934_05640) yhjB 1086051..1087520 (-) 1470 WP_342625000.1 sodium:solute symporter -
  AAC934_RS05645 (AAC934_05645) yhjC 1087517..1087717 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AAC934_RS05650 (AAC934_05650) - 1087925..1088287 (-) 363 WP_024571727.1 hypothetical protein -
  AAC934_RS05655 (AAC934_05655) yhjE 1088439..1089062 (+) 624 WP_010886465.1 VTT domain-containing protein -
  AAC934_RS05660 (AAC934_05660) lepB 1089064..1089570 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=988592 AAC934_RS05625 WP_003245329.1 1083997..1084575(+) (comK) [Bacillus subtilis strain LP]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=988592 AAC934_RS05625 WP_003245329.1 1083997..1084575(+) (comK) [Bacillus subtilis strain LP]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment