Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   R8568_RS09745 Genome accession   NZ_AP026931
Coordinates   1898364..1898666 (-) Length   100 a.a.
NCBI ID   WP_000413382.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701541     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1893364..1903666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8568_RS09710 (PC1520_18910) rnpA 1894043..1894414 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R8568_RS09715 - 1894431..1894562 (-) 132 WP_000768904.1 hypothetical protein -
  R8568_RS09720 (PC1520_18920) - 1894563..1895753 (-) 1191 WP_000167766.1 acetate kinase -
  R8568_RS09725 (PC1520_18930) comYH 1895804..1896757 (-) 954 WP_000345101.1 class I SAM-dependent methyltransferase Machinery gene
  R8568_RS09730 - 1896818..1897412 (-) 595 Protein_1892 class I SAM-dependent methyltransferase -
  R8568_RS09735 (PC1520_18960) comGG/cglG 1897549..1897962 (-) 414 WP_000265624.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8568_RS09740 (PC1520_18970) comGF/cglF 1897940..1898401 (-) 462 WP_000250542.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8568_RS09745 (PC1520_18980) comGE/cglE 1898364..1898666 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8568_RS09750 (PC1520_18990) comGD/cglD 1898629..1899033 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8568_RS09755 (PC1520_19000) comGC/cglC 1899026..1899352 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  R8568_RS09760 (PC1520_19010) comGB/cglB 1899354..1900370 (-) 1017 WP_078375398.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8568_RS09765 (PC1520_19020) comGA/cglA/cilD 1900318..1901259 (-) 942 WP_000249567.1 competence type IV pilus ATPase ComGA Machinery gene
  R8568_RS09770 (PC1520_19030) - 1901335..1901700 (-) 366 WP_000286415.1 DUF1033 family protein -
  R8568_RS09775 (PC1520_19040) - 1901851..1902909 (-) 1059 WP_000649473.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11108.08 Da        Isoelectric Point: 9.7273

>NTDB_id=98850 R8568_RS09745 WP_000413382.1 1898364..1898666(-) (comGE/cglE) [Streptococcus pneumoniae strain PZ900701541]
MEKLNALRKQKIRAVILLEAVVALAIFASIATLLLGQIQKNRQEEAKILQKEEVLRVAKMALQTGQNQVSINGVEIQVFS
SEKGLEVYHGSEQLLAIKEP

Nucleotide


Download         Length: 303 bp        

>NTDB_id=98850 R8568_RS09745 WP_000413382.1 1898364..1898666(-) (comGE/cglE) [Streptococcus pneumoniae strain PZ900701541]
ATGGAAAAATTAAACGCATTAAGGAAACAAAAAATTAGGGCAGTGATTTTACTGGAAGCAGTAGTCGCTCTAGCTATCTT
TGCCAGCATTGCGACCCTCCTTTTGGGACAAATTCAAAAAAATAGGCAAGAGGAAGCAAAAATCTTGCAAAAGGAAGAAG
TCTTGAGGGTAGCTAAGATGGCCCTGCAGACGGGGCAAAATCAGGTAAGCATCAACGGAGTTGAGATTCAGGTATTTTCT
AGTGAAAAAGGATTGGAGGTCTACCATGGTTCAGAACAGTTGTTGGCAATCAAAGAGCCATAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(16-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

100

100

1
  comGE/cglE Streptococcus pneumoniae D39

100

100

1
  comGE/cglE Streptococcus pneumoniae R6

100

100

1
  comGE/cglE Streptococcus pneumoniae TIGR4

100

100

1
  comGE/cglE Streptococcus mitis NCTC 12261

98

100

0.98
  comGE/cglE Streptococcus mitis SK321

98

100

0.98
  comYE Streptococcus mutans UA140

44.444

90

0.4
  comYE Streptococcus mutans UA159

44.444

90

0.4

Multiple sequence alignment