Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ACAK36_RS08695 | Genome accession | NZ_AP031585 |
| Coordinates | 1794904..1795419 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477156.1 | Uniprot ID | A0ABX6CJ21 |
| Organism | Acinetobacter baumannii strain JUNP543 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1789904..1800419
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAK36_RS08675 (JUNP543_1738) | - | 1790223..1791683 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| ACAK36_RS08680 (JUNP543_1739) | - | 1791960..1793165 (+) | 1206 | WP_045543726.1 | RtcB family protein | - |
| ACAK36_RS08685 (JUNP543_1740) | - | 1793169..1793327 (+) | 159 | WP_031974996.1 | hypothetical protein | - |
| ACAK36_RS08690 (JUNP543_1741) | omp38 | 1793452..1794522 (-) | 1071 | WP_000777878.1 | outer membrane protein Omp38 | - |
| ACAK36_RS08695 (JUNP543_1742) | fimT | 1794904..1795419 (+) | 516 | WP_000477156.1 | GspH/FimT family pseudopilin | Machinery gene |
| ACAK36_RS08700 (JUNP543_1743) | - | 1795528..1796703 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ACAK36_RS08705 (JUNP543_1744) | - | 1796830..1797273 (+) | 444 | WP_045543725.1 | VOC family protein | - |
| ACAK36_RS08710 (JUNP543_1745) | - | 1797316..1797669 (-) | 354 | WP_000457783.1 | multidrug efflux SMR transporter | - |
| ACAK36_RS08715 (JUNP543_1746) | - | 1797751..1798236 (-) | 486 | WP_000935250.1 | DUF934 domain-containing protein | - |
| ACAK36_RS08720 (JUNP543_1747) | - | 1798229..1799872 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19594.80 Da Isoelectric Point: 8.8196
>NTDB_id=98850 ACAK36_RS08695 WP_000477156.1 1794904..1795419(+) (fimT) [Acinetobacter baumannii strain JUNP543]
MFKSPGFTTVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTTVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=98850 ACAK36_RS08695 WP_000477156.1 1794904..1795419(+) (fimT) [Acinetobacter baumannii strain JUNP543]
ATGTTTAAATCTCCTGGTTTTACTACAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTACTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTACAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTACTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |