Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAG689_RS20925 Genome accession   NZ_CP152342
Coordinates   4256749..4258125 (-) Length   458 a.a.
NCBI ID   WP_406623594.1    Uniprot ID   -
Organism   Acidovorax sp. SDU_ACID1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4251749..4263125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG689_RS20905 - 4252182..4252610 (-) 429 WP_406623590.1 glycerate kinase -
  AAG689_RS20910 - 4252688..4254115 (+) 1428 WP_406623591.1 PLP-dependent aminotransferase family protein -
  AAG689_RS20915 - 4254188..4255231 (-) 1044 WP_406623592.1 acyl-CoA dehydrogenase family protein -
  AAG689_RS20920 ccoG 4255228..4256655 (-) 1428 WP_406623593.1 cytochrome c oxidase accessory protein CcoG -
  AAG689_RS20925 radA 4256749..4258125 (-) 1377 WP_406623594.1 DNA repair protein RadA Machinery gene
  AAG689_RS20930 - 4258159..4259136 (+) 978 WP_406623595.1 2-dehydropantoate 2-reductase -
  AAG689_RS20935 - 4259198..4259821 (+) 624 WP_406623596.1 glutathione S-transferase family protein -
  AAG689_RS20940 - 4259818..4260708 (+) 891 WP_406623597.1 NAD(P)-dependent oxidoreductase -
  AAG689_RS20945 - 4260718..4261497 (-) 780 WP_406623598.1 IclR family transcriptional regulator -
  AAG689_RS20950 - 4261613..4262608 (+) 996 WP_406623599.1 Bug family tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 47972.48 Da        Isoelectric Point: 6.9935

>NTDB_id=988499 AAG689_RS20925 WP_406623594.1 4256749..4258125(-) (radA) [Acidovorax sp. SDU_ACID1]
MAKDKTLYTCSECGGTSPRWLGKCPSCGAWNTLVETVAESAGKNRLSAPKHAGLAQAQTVMPLAAIEATEVARTASGIEE
LDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEGSQVNVLAEIQLEKI
LATVEATQPAVCVIDSIQTIYSDQLTSAPGSVAQVRECAAHLTRMAKATGIAVILVGHVTKEGALAGPRVLEHMVDTVLY
FEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTERGLRGVSNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDGGG
PSPRRLSVGLERDRLAMLLAVLHRHAGVACADQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKALPKGFIAFGEVGLA
GEVRPAPRGQERLKEAAKLGFTVAVVPKANAPKKPIEGLEIHAVERVEEAMDVVRGLA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=988499 AAG689_RS20925 WP_406623594.1 4256749..4258125(-) (radA) [Acidovorax sp. SDU_ACID1]
ATGGCCAAGGACAAAACCCTCTACACCTGCAGCGAATGCGGCGGCACCAGCCCGCGCTGGCTCGGCAAGTGCCCCTCGTG
CGGCGCGTGGAACACCCTGGTCGAGACCGTGGCCGAGAGCGCCGGCAAGAACCGCCTGAGCGCCCCGAAGCACGCGGGCC
TGGCGCAGGCCCAGACGGTGATGCCCCTGGCCGCCATCGAGGCCACCGAGGTGGCGCGCACCGCCAGCGGCATCGAGGAG
CTGGACCGCGTGCTGGGCGGCGGCGTGGTCGAGGGCGGCGTGGTGCTGATCGGAGGCGACCCCGGCATCGGCAAGTCCAC
GCTGCTGCTGCAGGCCATGGACGCGCTGCACCGCGTGGGCCTGCCCACGCTCTACGTGACGGGCGAGGAAAGCGGCGCGC
AGGTGGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGGCAGCCAGGTCAACGTGCTGGCCGAGATCCAGCTCGAAAAAATC
CTCGCCACCGTCGAGGCCACGCAGCCCGCCGTCTGCGTGATCGACTCCATCCAGACCATCTATTCCGACCAGCTCACCAG
CGCGCCCGGCAGCGTGGCCCAGGTGCGCGAGTGCGCGGCGCACCTCACGCGCATGGCCAAGGCCACGGGCATCGCCGTCA
TCCTCGTGGGCCACGTGACCAAGGAGGGGGCGCTCGCCGGCCCGCGCGTGCTGGAGCACATGGTCGATACGGTGCTCTAT
TTCGAGGGCGACACGCACAGCCAGTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCCGTCAACGAGATCGGCGT
GTTCGCCATGACCGAGCGCGGCCTGCGCGGCGTGTCCAACCCCAGCGCCATTTTCCTGAGCCAGCACAGCGAGCCCGTGC
CCGGCAGCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAGATCCAGGCGCTGGTCGACGGCGGCGGC
CCCAGCCCGCGGCGCCTGTCGGTGGGCCTGGAGCGGGACCGCCTGGCCATGCTGCTCGCGGTGCTGCACCGCCACGCGGG
CGTGGCCTGCGCGGACCAGGACGTGTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCCGCCGCCGACCTGGCGG
TGATGCTCGCCATCACGAGCAGCCTGCGCGGCAAGGCGCTGCCCAAGGGCTTCATCGCGTTCGGCGAGGTGGGCCTGGCC
GGCGAGGTGCGCCCCGCGCCGCGCGGGCAGGAGCGGCTCAAGGAGGCCGCGAAGCTGGGTTTCACTGTCGCGGTGGTGCC
CAAAGCCAATGCGCCCAAGAAGCCCATCGAGGGCCTGGAGATCCACGCCGTGGAGCGCGTGGAAGAGGCGATGGACGTGG
TGCGCGGACTGGCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.339

99.127

0.489
  radA Streptococcus mitis NCTC 12261

47.588

99.563

0.474
  radA Streptococcus pneumoniae D39

49.423

94.541

0.467
  radA Streptococcus pneumoniae TIGR4

49.423

94.541

0.467
  radA Streptococcus mitis SK321

49.423

94.541

0.467
  radA Streptococcus pneumoniae R6

49.423

94.541

0.467
  radA Streptococcus pneumoniae Rx1

49.423

94.541

0.467

Multiple sequence alignment