Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   AAG689_RS19980 Genome accession   NZ_CP152342
Coordinates   4077688..4079232 (-) Length   514 a.a.
NCBI ID   WP_406623457.1    Uniprot ID   -
Organism   Acidovorax sp. SDU_ACID1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4072688..4084232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG689_RS19970 - 4072993..4076943 (-) 3951 WP_406623455.1 M36 family metallopeptidase -
  AAG689_RS19975 - 4077229..4077672 (-) 444 WP_406623456.1 acyl-CoA thioesterase -
  AAG689_RS19980 rpoN/rpoN1 4077688..4079232 (-) 1545 WP_406623457.1 RNA polymerase factor sigma-54 Machinery gene
  AAG689_RS19985 lptB 4079232..4080026 (-) 795 WP_406623458.1 LPS export ABC transporter ATP-binding protein -
  AAG689_RS19990 lptA 4080026..4080670 (-) 645 WP_020227885.1 lipopolysaccharide transport periplasmic protein LptA -
  AAG689_RS19995 - 4080772..4081428 (-) 657 WP_406623459.1 thiol:disulfide interchange protein DsbA/DsbL -
  AAG689_RS20000 - 4081486..4082145 (-) 660 WP_406623460.1 SPOR domain-containing protein -
  AAG689_RS20005 argS 4082158..4083860 (-) 1703 Protein_3942 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 56008.92 Da        Isoelectric Point: 4.6464

>NTDB_id=988497 AAG689_RS19980 WP_406623457.1 4077688..4079232(-) (rpoN/rpoN1) [Acidovorax sp. SDU_ACID1]
MKPSLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLGDNPFLEVAQDEAPREEFGIAQADAPASADEDASYSGAA
SAEPASAEAPNEPEPSPDWEGDGTVEMAPDDGEWGGDAPARTGSSSGDGDEVDATELARSHESLTDHLHRQALSLRLSEV
DCAALRFLIESLNDDGYLDEPLESLAQSLAGTEDPEQVDELVHRFTVALGLLQSLEPAGVGARNLAECLALQLRAMDQDE
EGDPAVIQAALAICRQPLELLAKRDVRRLAQAAGSSEDVTRAAMALIARLEPRPGRRFADVDRNIIVPDVIVRKTGRGAQ
QRFSVQLNPDVMPRLRVHDIYAGALRGGRGSEGHQALQQRLQEARWFIKNIQQRFDTILRVSTAIVERQKNFFVHGELAM
RPLVLRDIADELGLHESTISRVTTAKYMATPQGTFELKYFFGSGLGTETGGNASSTAVRALIKQFVAAENPHKPLSDSQI
ADMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=988497 AAG689_RS19980 WP_406623457.1 4077688..4079232(-) (rpoN/rpoN1) [Acidovorax sp. SDU_ACID1]
ATGAAACCCAGCCTGTCGCTGCGTGTCTCGCAGCATCTGGCGCTCACGCCGCAGTTGCAGCAGTCGATCCGGCTGCTGCA
GCTCTCCACGCTGGAGCTGGCGCAGGAAGTCGAGCAGATGCTCGGCGACAACCCCTTCCTGGAGGTGGCGCAGGATGAGG
CGCCGCGCGAGGAGTTCGGCATCGCCCAGGCCGATGCGCCCGCCAGTGCCGACGAAGATGCTTCTTATTCAGGAGCTGCC
AGCGCTGAGCCAGCAAGCGCTGAAGCCCCAAATGAACCTGAACCCTCCCCGGACTGGGAGGGCGACGGCACCGTCGAGAT
GGCCCCCGACGACGGCGAGTGGGGCGGCGATGCCCCCGCGCGCACCGGATCTTCCAGCGGCGATGGCGACGAGGTGGACG
CCACGGAGCTCGCCCGCAGCCACGAATCGCTCACCGACCATCTGCACCGCCAGGCGCTCTCGCTGCGTCTGTCGGAGGTG
GACTGCGCCGCGCTGCGCTTCCTCATCGAATCGCTGAACGACGACGGTTACCTCGACGAGCCGCTCGAATCCCTCGCGCA
GAGCCTGGCCGGCACCGAAGACCCCGAGCAGGTGGACGAGCTGGTGCACCGCTTCACCGTCGCCCTGGGCCTGCTGCAAA
GCCTGGAGCCCGCCGGCGTAGGCGCGCGCAACCTGGCCGAATGCCTGGCGCTGCAGCTGCGTGCGATGGACCAGGACGAG
GAGGGCGACCCGGCCGTGATCCAGGCCGCGCTCGCCATCTGCCGCCAGCCGCTGGAGTTGCTGGCCAAGCGCGACGTGCG
CCGCCTGGCCCAGGCCGCCGGCAGCAGCGAAGACGTGACGCGCGCCGCCATGGCGCTCATCGCGCGGCTGGAGCCGCGCC
CCGGCCGGCGCTTCGCCGACGTGGACCGCAACATCATCGTGCCCGACGTCATCGTGCGCAAAACCGGGCGCGGCGCGCAG
CAGCGCTTCAGCGTGCAGCTCAACCCCGACGTGATGCCCCGCCTGCGCGTGCACGACATCTACGCCGGAGCGCTGCGTGG
CGGGCGCGGCAGCGAAGGCCACCAGGCGCTGCAGCAGCGCCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGC
GCTTCGACACCATCCTGCGCGTCTCCACCGCCATCGTCGAGCGGCAGAAGAACTTCTTCGTCCACGGCGAGCTGGCCATG
CGCCCGCTGGTGCTGCGCGACATCGCCGACGAGCTGGGCCTGCACGAGTCCACCATCAGCCGGGTGACCACCGCCAAGTA
CATGGCCACGCCGCAGGGCACGTTCGAGCTGAAGTATTTCTTCGGCTCCGGCCTGGGCACCGAGACCGGCGGCAACGCCT
CCAGCACGGCCGTGCGCGCGCTCATCAAGCAGTTCGTGGCCGCCGAGAACCCGCACAAGCCCCTGTCGGACAGCCAGATC
GCCGACATGCTCAAGGAACAGGGTATCGAGTGCGCACGCCGCACCGTGGCCAAGTACCGCGAGGCGCTCAAGATCGCGCC
CGCCAACCTGCGCAAGGCGCTCTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(356-512)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(135-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.053

100

0.541

Multiple sequence alignment