Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AAGS36_RS20435 | Genome accession | NZ_CP152334 |
| Coordinates | 4196347..4197147 (+) | Length | 266 a.a. |
| NCBI ID | WP_021441214.1 | Uniprot ID | A0A4V0HF22 |
| Organism | Klebsiella pneumoniae strain MRSN972109 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4191347..4202147
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAGS36_RS20400 (AAGS36_20400) | gspH | 4191503..4192012 (+) | 510 | WP_021441218.1 | type II secretion system minor pseudopilin GspH | - |
| AAGS36_RS20405 (AAGS36_20405) | gspI | 4192015..4192380 (+) | 366 | WP_002889025.1 | type II secretion system minor pseudopilin GspI | - |
| AAGS36_RS20410 (AAGS36_20410) | gspJ | 4192377..4192973 (+) | 597 | WP_032428541.1 | type II secretion system minor pseudopilin GspJ | - |
| AAGS36_RS20415 (AAGS36_20415) | gspK | 4192970..4193956 (+) | 987 | WP_004183041.1 | type II secretion system minor pseudopilin GspK | - |
| AAGS36_RS20420 (AAGS36_20420) | gspL | 4193943..4195136 (+) | 1194 | WP_021441216.1 | type II secretion system protein GspL | - |
| AAGS36_RS20425 (AAGS36_20425) | - | 4195129..4195614 (+) | 486 | WP_004151943.1 | type II secretion system protein M | - |
| AAGS36_RS20430 (AAGS36_20430) | - | 4195604..4196350 (+) | 747 | WP_021441215.1 | type II secretion system protein N | - |
| AAGS36_RS20435 (AAGS36_20435) | pilD | 4196347..4197147 (+) | 801 | WP_021441214.1 | A24 family peptidase | Machinery gene |
| AAGS36_RS20440 (AAGS36_20440) | hrpB | 4197195..4199624 (-) | 2430 | WP_032428540.1 | ATP-dependent helicase HrpB | - |
| AAGS36_RS20445 (AAGS36_20445) | thpR | 4199697..4200233 (+) | 537 | WP_004145901.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| AAGS36_RS20450 (AAGS36_20450) | sfsA | 4200233..4200949 (+) | 717 | WP_002888848.1 | DNA/RNA nuclease SfsA | - |
| AAGS36_RS20455 (AAGS36_20455) | dksA | 4201112..4201567 (+) | 456 | WP_002888845.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 266 a.a. Molecular weight: 29419.04 Da Isoelectric Point: 8.8894
>NTDB_id=988372 AAGS36_RS20435 WP_021441214.1 4196347..4197147(+) (pilD) [Klebsiella pneumoniae strain MRSN972109]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
SRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
SRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV
Nucleotide
Download Length: 801 bp
>NTDB_id=988372 AAGS36_RS20435 WP_021441214.1 4196347..4197147(+) (pilD) [Klebsiella pneumoniae strain MRSN972109]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
AGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
TCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
AGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
TCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
49.434 |
99.624 |
0.492 |
| pilD | Vibrio campbellii strain DS40M4 |
46.182 |
100 |
0.477 |
| pilD | Acinetobacter nosocomialis M2 |
46.008 |
98.872 |
0.455 |
| pilD | Acinetobacter baumannii D1279779 |
45.247 |
98.872 |
0.447 |
| pilD | Neisseria gonorrhoeae MS11 |
43.295 |
98.12 |
0.425 |