Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACOB87_RS18795 Genome accession   NZ_CP184648
Coordinates   4372446..4373444 (-) Length   332 a.a.
NCBI ID   WP_420311025.1    Uniprot ID   -
Organism   Streptomyces sp. YS-B37     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4367446..4378444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOB87_RS18780 (ACOB87_18780) - 4368688..4370241 (-) 1554 WP_420311024.1 MFS transporter -
  ACOB87_RS18785 (ACOB87_18785) - 4370410..4371381 (+) 972 WP_328932975.1 helix-turn-helix transcriptional regulator -
  ACOB87_RS18790 (ACOB87_18790) - 4371389..4372015 (-) 627 WP_402415383.1 TetR/AcrR family transcriptional regulator -
  ACOB87_RS18795 (ACOB87_18795) rpoS 4372446..4373444 (-) 999 WP_420311025.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACOB87_RS18800 (ACOB87_18800) - 4373646..4374176 (+) 531 WP_420311026.1 GNAT family N-acetyltransferase -
  ACOB87_RS18805 (ACOB87_18805) - 4374217..4375020 (-) 804 WP_401316517.1 dioxygenase -
  ACOB87_RS18810 (ACOB87_18810) - 4375131..4375643 (+) 513 WP_420311027.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACOB87_RS18815 (ACOB87_18815) - 4375755..4377317 (-) 1563 WP_328829875.1 MFS transporter -
  ACOB87_RS18820 (ACOB87_18820) - 4377469..4378113 (-) 645 WP_266771369.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37192.89 Da        Isoelectric Point: 5.2586

>NTDB_id=988265 ACOB87_RS18795 WP_420311025.1 4372446..4373444(-) (rpoS) [Streptomyces sp. YS-B37]
MATRAVARRKSATGETSDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTVEAGVFARQVLEGEEKSQAD
ASRAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=988265 ACOB87_RS18795 WP_420311025.1 4372446..4373444(-) (rpoS) [Streptomyces sp. YS-B37]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGACGCGGCACGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGTACACCGCTGCTCGACGCCGCAAAGG
AAGTCGAGCTTTCGCAGACCGTCGAAGCGGGCGTGTTCGCGCGCCAGGTTCTCGAGGGCGAGGAGAAGTCCCAGGCGGAC
GCCTCCCGCGCCGAGCTCGAGGCCCTGGTCGCCGAAGGGGAGCGTGCCAAGGACGTCTTCATCCGTTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TCCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGGACCATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGCATCCGCCGAGT
GCAGCGCGAGTTCAACCGGAAGAACGGCCGGGAGCCCGAGCACGCGGAGATCGCCGCGGAGCTGGACTCGACGCCGGAGC
GCGTGACCGACGTGCTCGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAGCTGGACGA
TCTGATCGGCCGGCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGTGAGCGGACGC
TGACGGAGGTCGGCAAGGAGCACGGGCTGACGCGGGAGCGGATCCGGCAGATCGAGAAGCACGCGTTGCTGGAGCTGAAG
AAGCTGGCGAGCCAGACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364

Multiple sequence alignment