Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AAD080_RS16820 Genome accession   NZ_CP152308
Coordinates   279488..280588 (+) Length   366 a.a.
NCBI ID   WP_068718174.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 274488..285588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS16790 - 275609..275857 (-) 249 WP_225251225.1 hypothetical protein -
  AAD080_RS16795 - 276220..276534 (-) 315 WP_068718181.1 DUF496 family protein -
  AAD080_RS16800 - 276724..276930 (+) 207 WP_068718179.1 hypothetical protein -
  AAD080_RS16805 - 276952..277611 (+) 660 WP_342609521.1 YceH family protein -
  AAD080_RS16810 - 277614..277922 (+) 309 WP_156430617.1 GIY-YIG nuclease family protein -
  AAD080_RS16815 - 278010..279164 (+) 1155 WP_342609522.1 conjugal transfer protein TraF -
  AAD080_RS16820 luxP 279488..280588 (+) 1101 WP_068718174.1 substrate-binding domain-containing protein Regulator
  AAD080_RS16825 - 280603..282960 (+) 2358 Protein_242 LuxQ periplasmic sensor domain-containing protein -
  AAD080_RS16830 - 283017..284219 (+) 1203 WP_342607073.1 IS256 family transposase -
  AAD080_RS16835 - 284489..285013 (-) 525 WP_068718170.1 hypothetical protein -
  AAD080_RS16840 - 285163..285531 (-) 369 WP_342609523.1 NirD/YgiW/YdeI family stress tolerance protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41924.24 Da        Isoelectric Point: 9.4123

>NTDB_id=988241 AAD080_RS16820 WP_068718174.1 279488..280588(+) (luxP) [Vibrio tritonius strain JCM 16457 isolate MA35]
MIKRTITFCLLLMSVFPQLADASQVLKGYWHYREFLSHNPDQQMLTDKMVKTVRRDPVPLTIKQTRPITISVVFPGQQIS
DYWVRNIKAFELRMQELGIVYQLNQVFTRPNVDARELSLSLMEAIKANSDYVIFTLDTTRHRKFIEHVLQSSKTKLILQN
ITTPVKAWDKRQPMMYVGFDHELGTARLFDYYQKLEPAGSEYSVLYYSEGYISAARGDTFIQSLQTLGRYRLASSYYTKA
TEASGYQATLNIVKNHPNIKFIYACSTDIALGAIKALKELKRQDIVVNGWGGGSAELNEIAKGDMEVTVMRMNDDTGVAM
AEAIKWDLEGKPVPTVYSGGFEVVTKNDSLDRVKRLEKWAFRYSDR

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=988241 AAD080_RS16820 WP_068718174.1 279488..280588(+) (luxP) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGATCAAACGCACCATTACCTTTTGTTTACTTCTTATGTCAGTGTTTCCTCAGCTTGCGGATGCATCCCAAGTGCTTAA
AGGTTATTGGCATTATCGTGAGTTTCTAAGCCACAATCCCGATCAGCAAATGTTGACTGATAAAATGGTGAAAACGGTAC
GTCGCGATCCTGTCCCACTCACTATAAAACAAACACGTCCAATCACCATTTCAGTGGTTTTCCCTGGGCAACAAATCTCG
GATTATTGGGTTCGTAACATCAAAGCCTTTGAGCTACGAATGCAGGAATTGGGCATCGTGTATCAGCTTAATCAGGTATT
TACGCGTCCGAATGTGGATGCTAGAGAGTTGAGTTTGTCGCTAATGGAAGCGATAAAAGCCAATTCGGACTATGTGATTT
TCACTCTCGATACCACACGTCATCGCAAATTTATCGAACATGTTTTGCAATCATCAAAAACCAAGTTGATTTTGCAAAAC
ATTACCACGCCAGTTAAAGCGTGGGACAAGCGTCAGCCCATGATGTATGTCGGTTTCGACCATGAGCTTGGAACCGCAAG
ATTATTCGATTACTACCAAAAACTCGAACCTGCGGGCAGTGAATATTCAGTCTTATACTATTCTGAAGGCTATATCAGCG
CCGCTCGTGGCGATACATTTATTCAATCATTGCAAACCTTAGGTCGCTATCGACTCGCATCGTCATACTACACCAAAGCC
ACTGAAGCGAGTGGTTACCAAGCAACATTAAATATCGTAAAGAATCATCCTAACATTAAATTTATATACGCTTGTTCAAC
CGATATTGCTTTAGGAGCGATCAAGGCACTCAAGGAACTCAAACGCCAAGATATTGTTGTAAATGGCTGGGGCGGAGGTT
CTGCTGAGCTCAATGAAATTGCTAAAGGCGATATGGAGGTGACGGTAATGCGTATGAATGATGATACGGGTGTCGCGATG
GCCGAAGCGATCAAGTGGGACTTAGAAGGCAAGCCTGTTCCTACGGTTTATTCAGGTGGCTTTGAAGTCGTGACTAAGAA
CGACAGCCTTGATAGAGTTAAACGTCTAGAAAAATGGGCGTTTCGATATTCGGATCGCTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

67.486

100

0.675

Multiple sequence alignment