Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AAD080_RS14345 Genome accession   NZ_CP152307
Coordinates   3151456..3152463 (-) Length   335 a.a.
NCBI ID   WP_068715465.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3146456..3157463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS14320 rraA 3147103..3147627 (-) 525 WP_225249330.1 ribonuclease E activity regulator RraA -
  AAD080_RS14325 - 3147702..3148619 (-) 918 WP_342607705.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AAD080_RS14330 hslU 3148725..3150056 (-) 1332 WP_068715459.1 HslU--HslV peptidase ATPase subunit -
  AAD080_RS14335 hslV 3150098..3150664 (-) 567 WP_068715460.1 ATP-dependent protease subunit HslV -
  AAD080_RS14340 - 3150791..3151336 (-) 546 WP_068715463.1 SPOR domain-containing protein -
  AAD080_RS14345 cytR 3151456..3152463 (-) 1008 WP_068715465.1 DNA-binding transcriptional regulator CytR Regulator
  AAD080_RS14350 priA 3152775..3154979 (-) 2205 WP_225249331.1 primosomal protein N' -
  AAD080_RS14355 rpmE 3155288..3155506 (+) 219 WP_068715469.1 50S ribosomal protein L31 -
  AAD080_RS14360 - 3155785..3157062 (+) 1278 WP_342607706.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36808.41 Da        Isoelectric Point: 6.4960

>NTDB_id=988236 AAD080_RS14345 WP_068715465.1 3151456..3152463(-) (cytR) [Vibrio tritonius strain JCM 16457 isolate MA35]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAEIAGPESAALCSFRHQGYQQALRRAGITMNPTYCVSGDFSFAAGAKLVKQLLALPEPPTA
IFCHNDTMAIGAMQQAKRLGLRVPQDLSVVGFDDIQFAEYSDPPLTTISQPRYEIGRQAMLMMLELLRGHDVQAGSRLLE
TKLVIRESAAPPRIR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=988236 AAD080_RS14345 WP_068715465.1 3151456..3152463(-) (cytR) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTCTCAACAGCGACGGTCTCCCGCGCTTTGATGAATCCAGAAAA
AGTCTCATCTTCCACTCGTAAGCGTGTAGAAGATGCGGTTTTAGAAGCGGGCTATTCTCCCAACTCTTTAGCGAGAAATC
TGCGCCGTAATGAGTCTAAAACGATCGTTGCGATTGTGCCTGATATCTGTGACCCCTATTTTACAGAGATCATTCGCGGT
ATCGAAGACGCCGCGATGGAGCACGGTTATTTAGTGTTGTTAGGAGATAGTGGTCAGCAGAAAAAGCGGGAAAATTCATT
CGTCAATCTTGTCTTTACCAAACAGGCCGATGGTATGTTGCTGTTGGGGACAGATCTTCCTTTTGATGTAAGCAAGCCAG
AGCAGAAAAACTTGCCACCTATGGTGATGGCGTGTGAGTTCGCACCTGAACTTGAATTGCCTACTGTTCACATCGATAAC
TTGACTTCGGCGTTTGAAGCAGTGAATTACCTCACACAAATGGGTCATAAACGAGTGGCAGAGATTGCTGGACCAGAAAG
TGCAGCGTTATGTTCATTCCGTCATCAAGGTTATCAGCAAGCTCTGCGTCGAGCTGGTATCACCATGAACCCAACCTATT
GCGTGTCTGGTGATTTCTCTTTTGCTGCTGGTGCTAAGTTGGTGAAACAGTTATTGGCGTTACCAGAGCCACCAACCGCT
ATTTTCTGTCATAACGACACCATGGCGATAGGGGCTATGCAACAAGCCAAGCGTTTAGGTTTACGAGTACCGCAAGACCT
TTCTGTGGTTGGTTTTGATGATATTCAATTTGCAGAATACAGTGATCCACCATTGACAACCATTTCTCAGCCTCGTTATG
AGATTGGACGTCAGGCAATGCTCATGATGCTGGAACTGCTTCGCGGCCATGATGTGCAAGCTGGTTCGCGTTTACTGGAA
ACCAAATTGGTTATCCGTGAAAGTGCAGCACCACCGCGAATTCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.072

99.104

0.922
  cytR Vibrio parahaemolyticus RIMD 2210633

88.589

99.403

0.881

Multiple sequence alignment