Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AAD080_RS09035 Genome accession   NZ_CP152307
Coordinates   2008461..2009885 (+) Length   474 a.a.
NCBI ID   WP_342607129.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2003461..2014885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS09010 - 2004491..2005033 (-) 543 WP_342607125.1 hypothetical protein -
  AAD080_RS09015 - 2005151..2005462 (-) 312 WP_342607126.1 hypothetical protein -
  AAD080_RS09020 - 2005647..2006372 (+) 726 WP_342607127.1 response regulator -
  AAD080_RS09025 - 2006365..2007852 (+) 1488 WP_342607128.1 ATP-binding protein -
  AAD080_RS09030 - 2007902..2008240 (+) 339 Protein_1715 ParB-like protein -
  AAD080_RS09035 sbcB 2008461..2009885 (+) 1425 WP_342607129.1 exodeoxyribonuclease I Machinery gene
  AAD080_RS09040 - 2009918..2010340 (+) 423 WP_342607130.1 CidA/LrgA family protein -
  AAD080_RS09045 - 2010340..2011029 (+) 690 WP_342607131.1 CidB/LrgB family autolysis modulator -
  AAD080_RS09050 cdd 2011303..2012196 (+) 894 WP_068713931.1 cytidine deaminase -
  AAD080_RS09055 purT 2012535..2013710 (+) 1176 WP_068713932.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  AAD080_RS09060 - 2013774..2014421 (-) 648 WP_342607132.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54857.01 Da        Isoelectric Point: 4.9711

>NTDB_id=988224 AAD080_RS09035 WP_342607129.1 2008461..2009885(+) (sbcB) [Vibrio tritonius strain JCM 16457 isolate MA35]
MQQQHQPTFFFFDYETWGTSPAKDRPSQFAGIRTDADFNIIGDPLVMYCRLPSDYLPGPEAALITGITPQKAMSQGVSEP
EFIGRIYEELSRPNTTNLGYNSIRFDDEVTRYTCYRNFFDPYEWSWKNGNSRWDLLDVLRACHALRPEGIEWPENDEGFP
SFKLEHLSKANGIEHDNAHDALADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLTDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNQNAVITVDLAKDPTPLLELSAEELQTRLYTRKDDLADDELPVPVKLVHLNKCPILAPAKTLTAENAK
VIGIDREQCLANLATLREHPAIREKLINLFSQEREFAKDEDVDTQLYQGFFSPADKAAMEIIRETNPDQLASLELEYSDK
RIEPLLFRYRARHYPWTLNETEQRRWANHCREYFESHIESYMLNLENLVHEHESDTQKIAILKAVYRYVEQLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=988224 AAD080_RS09035 WP_342607129.1 2008461..2009885(+) (sbcB) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGCAACAGCAACACCAGCCTACTTTCTTTTTCTTTGACTATGAGACTTGGGGTACTAGCCCAGCCAAAGACAGACCAAG
TCAGTTTGCTGGCATTCGTACCGATGCAGACTTCAATATCATCGGGGATCCTTTGGTCATGTACTGTCGATTACCAAGCG
ATTATCTACCAGGACCAGAAGCTGCCTTGATAACTGGCATCACACCACAAAAAGCCATGAGCCAAGGGGTGTCTGAGCCG
GAATTCATTGGTCGAATTTATGAAGAATTGTCACGTCCTAACACCACCAACCTAGGCTATAACAGTATTCGTTTTGATGA
CGAAGTCACTCGTTATACCTGTTATCGTAACTTCTTTGATCCATACGAATGGAGTTGGAAAAACGGTAATTCTCGTTGGG
ATCTACTCGATGTATTACGTGCCTGCCACGCTCTCCGTCCCGAAGGGATTGAATGGCCAGAAAATGATGAAGGGTTCCCT
AGTTTTAAGCTAGAACACCTCTCAAAAGCCAACGGTATTGAACACGATAACGCGCACGATGCCTTAGCCGATGTGATAGC
GACCATTGAAATGGCGAAAAAGGTCAAAGCGGCGCAACCTAAATTGTTCGACTATTTCTTCAGCATGCGTAATAAACGCA
AATTAACGGATCTGGTCGATATCGTTAATATGACGCCACTAATGCACGTCTCAGGCATGCTCGGTCGTGAGTGCCAATAC
ACCAGTTGGATTGTGCCTGTCGCATGGCACCCAACCAATCAAAATGCTGTGATTACGGTGGATCTGGCCAAAGACCCAAC
GCCGTTACTGGAACTCTCCGCTGAAGAATTGCAGACTCGTCTCTATACTCGTAAAGACGATCTTGCCGATGATGAACTGC
CCGTTCCAGTCAAACTCGTGCATTTAAACAAATGCCCTATTTTAGCACCAGCGAAAACATTAACTGCAGAAAACGCCAAA
GTGATTGGCATCGATCGTGAGCAATGCTTGGCGAATTTGGCGACCTTGCGTGAACATCCAGCTATTCGAGAAAAGCTCAT
CAATCTGTTTAGTCAAGAACGTGAGTTTGCGAAAGATGAAGATGTGGATACACAGTTATATCAGGGATTCTTCTCACCTG
CCGATAAGGCCGCCATGGAAATCATCCGTGAAACAAATCCAGATCAATTGGCCTCATTAGAATTGGAATATAGTGATAAG
CGCATTGAACCTTTGCTGTTTCGATACCGTGCTCGTCATTATCCTTGGACACTAAATGAAACAGAACAACGTCGCTGGGC
AAATCACTGCCGCGAATATTTTGAAAGCCACATTGAGTCTTACATGCTCAATTTGGAAAATTTAGTCCATGAACATGAAA
GCGATACTCAGAAAATCGCAATATTAAAGGCCGTTTATCGGTACGTAGAACAACTCGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.973

99.789

0.808

Multiple sequence alignment