Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AAD080_RS02655 Genome accession   NZ_CP152307
Coordinates   563895..564413 (+) Length   172 a.a.
NCBI ID   WP_068712093.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 558895..569413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS02645 gshA 561696..563261 (+) 1566 WP_068712087.1 glutamate--cysteine ligase -
  AAD080_RS02650 - 563263..563868 (+) 606 WP_342608089.1 hypothetical protein -
  AAD080_RS02655 luxS 563895..564413 (+) 519 WP_068712093.1 S-ribosylhomocysteine lyase Regulator
  AAD080_RS02660 - 564518..565795 (-) 1278 WP_342608090.1 HlyC/CorC family transporter -
  AAD080_RS02665 - 565882..566676 (-) 795 WP_068712095.1 inner membrane protein YpjD -
  AAD080_RS02670 ffh 566903..568279 (+) 1377 WP_342608091.1 signal recognition particle protein -
  AAD080_RS02675 rpsP 568501..568749 (+) 249 WP_068712099.1 30S ribosomal protein S16 -
  AAD080_RS02680 rimM 568771..569325 (+) 555 WP_225251858.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19134.00 Da        Isoelectric Point: 5.8047

>NTDB_id=988222 AAD080_RS02655 WP_068712093.1 563895..564413(+) (luxS) [Vibrio tritonius strain JCM 16457 isolate MA35]
MPLLDSFTVDHTRMHAPAVRVAKNMTTPKGDTITVFDLRFTVPNKDILSERGIHTLEHLFAGFMRAHLNGSDVEIIDISP
MGCRTGFYMSLIGAPDEQRVAQAWLAAMEDVLKVEDQNHIPELNKYQCGTAAMHSLEQAKEIAQNVITAGIQVNKNDDLA
LPEAMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=988222 AAD080_RS02655 WP_068712093.1 563895..564413(+) (luxS) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGCCACTATTAGACAGTTTTACCGTCGATCATACACGTATGCATGCACCAGCAGTTCGTGTGGCAAAAAACATGACAAC
ACCTAAAGGCGATACCATTACGGTATTTGACTTGCGCTTTACTGTTCCTAACAAAGACATTTTGTCTGAAAGAGGAATTC
ATACACTAGAACATCTGTTTGCAGGATTCATGCGCGCGCACCTTAACGGTTCTGATGTCGAAATTATTGATATTTCACCA
ATGGGTTGTCGTACTGGTTTTTACATGAGTCTTATCGGCGCACCTGATGAGCAGCGTGTTGCACAGGCATGGTTAGCAGC
AATGGAAGATGTACTGAAAGTTGAAGATCAAAATCATATTCCTGAACTGAACAAATACCAATGTGGCACTGCAGCGATGC
ACTCTCTAGAGCAAGCAAAGGAGATTGCACAAAATGTAATTACCGCAGGTATCCAAGTCAATAAGAACGACGACTTGGCA
CTGCCAGAAGCGATGTTAAAAGAACTGAAAGTTCATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.628

100

0.866

Multiple sequence alignment