Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AAB158_RS24960 Genome accession   NZ_CP152291
Coordinates   5134997..5135947 (-) Length   316 a.a.
NCBI ID   WP_192207023.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain IMGN5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5129997..5140947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAB158_RS24945 (AAB158_24945) - 5132151..5133098 (-) 948 WP_342614787.1 siderophore ABC transporter substrate-binding protein -
  AAB158_RS24950 (AAB158_24950) - 5133305..5134063 (-) 759 WP_342614788.1 ABC transporter ATP-binding protein -
  AAB158_RS24955 (AAB158_24955) - 5134057..5135004 (-) 948 WP_342614789.1 iron chelate uptake ABC transporter family permease subunit -
  AAB158_RS24960 (AAB158_24960) ceuB 5134997..5135947 (-) 951 WP_192207023.1 ABC transporter permease Machinery gene
  AAB158_RS24965 (AAB158_24965) - 5136213..5136554 (+) 342 WP_192207025.1 DUF1450 domain-containing protein -
  AAB158_RS24970 (AAB158_24970) - 5136774..5138423 (+) 1650 WP_192207027.1 M14 family metallocarboxypeptidase -
  AAB158_RS24975 (AAB158_24975) shc 5138593..5140488 (+) 1896 WP_228467563.1 squalene--hopene cyclase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34976.27 Da        Isoelectric Point: 9.5025

>NTDB_id=988125 AAB158_RS24960 WP_192207023.1 5134997..5135947(-) (ceuB) [Peribacillus frigoritolerans strain IMGN5]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLDLSDDKVQIMLQSRFPRMVTIVIAGIVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYVSIPLVILAYFFANKFTVAGMGEEFAINLGINYKFIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLFCDILGRILIYPFEIPIGLVVGVIGSAIFIYLILRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=988125 AAB158_RS24960 WP_192207023.1 5134997..5135947(-) (ceuB) [Peribacillus frigoritolerans strain IMGN5]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTTTATCATTTACGTCATTATTCATTGGTGTAAAAGATATTACTCC
CCTGGATTTATTGGATTTAAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCTAGAATGGTGACCATAGTCA
TTGCCGGTATCGTGATGAGCATAAGCGGTCTGATCATGCAGCAATTGAGCCGCAATAAATTTGTATCCCCGACGACTGCC
GGAACCATGGATTCTGCACGGCTTGGACTTCTTCTTGCCATTATCATTTTTCCATCGGCAGCACTTATTGAGAAAATGGC
ATTCGCTTTCATATTCGCTTTGGCAGGTACATTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATTT
TCATTCCATTGGTTGGTTTGATGTTTGGGAATATCGTCGGATCCATCTCGACTTTCTTTGCCTATAAATATGATTTGATT
CAAAGCCTCAACACATGGATGAATGGAGATTTCTCGATGATCATGTCGGGAAGGTACGAACTTATATATGTAAGTATCCC
TCTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGTGAAGAGTTTGCCATCAATCTAGGAA
TCAATTATAAGTTTATAGTCAATTTTGGGTTGATCATCGTGGCATTATCCTCCACTGTCGTTTTGTTAACGGTGGGAACG
ATTCCTTTCATAGGATTGATCGTACCGAATATTGTATCCCTTTACCTTGGTGACAATTTGAAAAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCCGTATTCCTATTGTTCTGCGATATTCTGGGCAGGATCCTCATATATCCATTTGAAATCCCGATCG
GACTCGTGGTTGGTGTGATAGGAAGCGCCATATTTATCTATCTGATACTGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.633

100

0.506

Multiple sequence alignment