Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AAB158_RS18175 Genome accession   NZ_CP152291
Coordinates   3788500..3790875 (-) Length   791 a.a.
NCBI ID   WP_342614230.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain IMGN5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3783500..3795875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAB158_RS18160 (AAB158_18160) dtd 3785021..3785464 (-) 444 WP_192205929.1 D-aminoacyl-tRNA deacylase -
  AAB158_RS18165 (AAB158_18165) - 3785480..3787678 (-) 2199 WP_342614228.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AAB158_RS18170 (AAB158_18170) - 3787997..3788509 (-) 513 WP_342614229.1 adenine phosphoribosyltransferase -
  AAB158_RS18175 (AAB158_18175) recJ 3788500..3790875 (-) 2376 WP_342614230.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AAB158_RS18180 (AAB158_18180) secDF 3791022..3793283 (-) 2262 WP_342614231.1 protein translocase subunit SecDF -
  AAB158_RS18185 (AAB158_18185) - 3793479..3793784 (-) 306 WP_192205933.1 post-transcriptional regulator -
  AAB158_RS18190 (AAB158_18190) spoVB 3793955..3795517 (+) 1563 WP_192205934.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89155.60 Da        Isoelectric Point: 4.7734

>NTDB_id=988113 AAB158_RS18175 WP_342614230.1 3788500..3790875(-) (recJ) [Peribacillus frigoritolerans strain IMGN5]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVDEAKLAGEL
GMDYILTDHHEPGPELPEALAIIHPKLEDSSYPFKELAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSQSLEEATELANEINDINKE
RQEMVATMAEEAIAEVEENYPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDREKGLAKGSARSIAGFDLF
QSLSACREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEQLNEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGENHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVNHWQLFDYRGKGQAEKWLADIPVQNRMIVIFSEDIYRRYPFLQNHPDLVHIKNELDAEQLDCFEGHLAFMDMPPS
REYLKRVIANKNPSRIYAHFSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNYYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=988113 AAB158_RS18175 WP_342614230.1 3788500..3790875(-) (recJ) [Peribacillus frigoritolerans strain IMGN5]
ATGTTAAAGCCAAAAACCCGGTGGAACTTACGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCATTTTTATTTGTAAAAA
ATCAAACTTTTCATGATCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAAGAAGCGATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGATGGCGTGACATCGACGACAGTGATGATGACGGCGCTGACAAGATT
GGGGGCCGATGTTGACTTTTATATCCCGAATCGGTTTACAGAAGGATATGGCCCGAATCCGATGGCATTCCGCCTTGCAG
CCGAGCAAGGGGTGAAGGTATTAATAACCGTCGATACCGGAATTTCTGCAGTCGATGAAGCGAAACTTGCCGGCGAGCTT
GGCATGGATTATATTTTGACCGACCACCATGAACCGGGACCGGAACTGCCTGAGGCATTGGCAATCATCCACCCTAAACT
TGAGGACAGTTCCTATCCATTTAAAGAGCTTGCCGGAGTAGGGGTCGCATTTAAGCTGGCACACGCCTTGCTTGGGGAAT
TGCCTGAGGATTTGCTTGAGATAGCGGCAATCGGCACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCCGCGAAAGGCATCGAGCAGTTACGTTTGACGCGCCGCCCGGGACTTGTTGCCTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCGATGGCACCGCGGATCAATGCTGTCGGGCGCCTTGGAGATGCCGATC
CCGCTGTCGATTTATTGATGTCACAAAGTCTGGAAGAAGCGACGGAACTTGCCAATGAAATCAATGATATCAATAAAGAG
CGACAGGAAATGGTTGCGACAATGGCGGAAGAAGCGATTGCTGAAGTCGAGGAAAACTACCCGCCGGAGTCCAATGGAGT
GCTCATCATCGGCAGGGAGGGCTGGAACGCCGGAGTTGTGGGAATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CGACGATTGTATTGAGCTATGACCGGGAAAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGCCGGTTTCGATTTATTT
CAAAGTCTTTCCGCCTGCCGTGAAATGCTGCCTCATTTCGGTGGACATCCGATGGCTGCTGGAATGACCTTGAAAATTGA
AGATGTTCAGGAGCTCAGGGACCGCATGAACTTGATTGCGAAAGAACAACTGAACGAAGAGGACTTCACACCCATTACAA
ACTTGGACGGAGCAACGACCTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTGGCGCCATTTGGGGTT
ACGAATCCTAAGCCGAAGATTTTGATAGATTCCGTCCAGCTTTCTAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTGCAGCTGGAAGATGGTGAAAATCACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTCTCGGTTATTGGTGAGCTTTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGAACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGTACAAAACCGGATGATTGTCATTTTCTCGGAAGATATATATCGCAGATACCCATTTTTGCAAAACCATCCAGATCTCG
TTCATATCAAGAATGAACTGGATGCAGAGCAGCTCGACTGCTTCGAAGGTCATTTGGCATTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGTGATTGCCAATAAGAACCCTTCGCGTATCTACGCTCACTTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCAACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAAAAAGGTCCGCTCGATGTGAAAA
GATACGGTGATGACCTGGCTAAATATCGCGGCTGGTCAAGAGATACAGTGGATTTTATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAGAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAACT
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-562)

DHHA1 domain (DHHA1)

(316-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.855

100

0.55

Multiple sequence alignment