Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AAB158_RS06340 Genome accession   NZ_CP152291
Coordinates   1312121..1313938 (+) Length   605 a.a.
NCBI ID   WP_192203716.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain IMGN5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307121..1318938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAB158_RS06320 (AAB158_06320) spxA 1307480..1307875 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  AAB158_RS06325 (AAB158_06325) mecA 1308334..1309002 (+) 669 WP_192203713.1 adaptor protein MecA -
  AAB158_RS06330 (AAB158_06330) cls 1309118..1310626 (+) 1509 WP_342615272.1 cardiolipin synthase -
  AAB158_RS06335 (AAB158_06335) - 1310720..1311928 (+) 1209 WP_342615273.1 competence protein CoiA family protein -
  AAB158_RS06340 (AAB158_06340) pepF 1312121..1313938 (+) 1818 WP_192203716.1 oligoendopeptidase F Regulator
  AAB158_RS06345 (AAB158_06345) - 1314859..1315725 (-) 867 WP_342615797.1 ClpXP adapter SpxH family protein -
  AAB158_RS06350 (AAB158_06350) - 1315749..1316153 (-) 405 WP_048686552.1 globin -
  AAB158_RS06355 (AAB158_06355) - 1316380..1317039 (-) 660 WP_342615274.1 lytic transglycosylase domain-containing protein -
  AAB158_RS06360 (AAB158_06360) - 1317071..1317649 (-) 579 WP_192203718.1 CYTH domain-containing protein -
  AAB158_RS06365 (AAB158_06365) - 1317966..1318586 (+) 621 WP_286182086.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69792.16 Da        Isoelectric Point: 4.6809

>NTDB_id=988100 AAB158_RS06340 WP_192203716.1 1312121..1313938(+) (pepF) [Peribacillus frigoritolerans strain IMGN5]
MAQETKANTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDENKVEGFLEEKEDLKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYISFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLQLDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVTIDDEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=988100 AAB158_RS06340 WP_192203716.1 1312121..1313938(+) (pepF) [Peribacillus frigoritolerans strain IMGN5]
ATGGCACAGGAAACAAAAGCAAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACTTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCTTTCAAAGCGGTAAAGGAAGACCTCAAGAAGGCGGAAGCACATAAAGGGA
CGTTGGGAGAAAGCGCAGAAAAATTATTTGCGGCCCTTCAACTCCAAGATGAGGTATTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCTTTTTATCAAGGGATGGAGGATAGGGCAAAAGCTTTATA
CGCCCAGGCAGCTGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGATGAAAACAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGATTTGAAATTATACAAACATTCTTTAGAGGAAATCAATCTTCAGAGGCCCCATATCTTATCTGCTGAG
CAGGAAGAATTATTGGCGCAAGCATCAGAAGTACTTGATGCATCGGGCAACACTTTCGGTATGCTAAACAATGCCGATTT
GAAATTCCCGACCATTAAGGATGAAGAGGGAAATGAAGTGGAAATCACTCACGGAAGGTATATCAGTTTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTATGGAGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAATGACAACTTGCCATTACTGCACCGCTATCTTG
ATTTACGTAAAAAAGTACTGCAATTAGACGAACTTCATATGTATGATCTATTCACCCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGATGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTTGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAATCGTTGGGTCGATGTGCATGAAAACAAAGGGAAACGAAGCGGTGCCTATTCTTCTGGTACATATG
GGACGAATCCTTATATTTTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGACATTCG
GTCCATAGCTACTATACACGTAAATATCAGCCATATCCATATGGGAATTATTCCATATTTGTAGCGGAAGTTGCATCGAC
CTGTAATGAAAACCTGTTGAACGATTATTTACTGAATTCAATCGAAGATGAAAAGAAACGCATCTATTTATTGAATCATT
ACCTGGAAGGTTTCCGCGGCACACTGTTCCGGCAAACGATGTTTGCAGAGTTTGAACATACGATTCATTTAAAAGCTCAA
AATGGGGAAGCGTTGACAGCGGATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGAGAGAACGTGAC
CATTGATGACGAAATCGGTTTGGAATGGGCGCGTATTCCACATTTCTACTATAATTACTACGTTTATCAATATGCAACAG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCCGTCAAAAGGTATCTGGAGTTCTTG
AAGTCAGGAAGTTCCGATTATCCGATTGAAGTGCTCAAAAAGGCTGGCGTCGATATGACAAAAGCTGAACCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGAGCTTTTGAATAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498

Multiple sequence alignment