Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8568_RS02390 Genome accession   NZ_AP026931
Coordinates   480989..481720 (+) Length   243 a.a.
NCBI ID   WP_000889918.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701541     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 475989..486720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8568_RS02370 (PC1520_04690) - 477586..477942 (+) 357 WP_000114431.1 hypothetical protein -
  R8568_RS02375 (PC1520_04700) dnaJ 478344..479480 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  R8568_RS02380 (PC1520_04710) - 480214..480501 (-) 288 WP_000777753.1 hypothetical protein -
  R8568_RS02385 (PC1520_04720) - 480511..480921 (-) 411 WP_001278303.1 HIT family protein -
  R8568_RS02390 (PC1520_04730) pptA 480989..481720 (+) 732 WP_000889918.1 ABC transporter ATP-binding protein Regulator
  R8568_RS02395 (PC1520_04740) - 481717..482766 (+) 1050 WP_000653773.1 ABC transporter permease -
  R8568_RS02400 (PC1520_04750) - 482934..483263 (-) 330 WP_317640684.1 helicase BlpT -
  R8568_RS02405 (PC1520_04760) - 483539..483877 (+) 339 WP_000682126.1 LytTR family DNA-binding domain-containing protein -
  R8568_RS02410 (PC1520_04770) comE/blpR 483882..484619 (+) 738 WP_001219143.1 response regulator transcription factor Regulator
  R8568_RS02415 (PC1520_04780) - 484633..485973 (+) 1341 WP_001028651.1 sensor histidine kinase -
  R8568_RS02420 (PC1520_04790) blpC 486018..486173 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27027.50 Da        Isoelectric Point: 4.7044

>NTDB_id=98803 R8568_RS02390 WP_000889918.1 480989..481720(+) (pptA) [Streptococcus pneumoniae strain PZ900701541]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLEGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=98803 R8568_RS02390 WP_000889918.1 480989..481720(+) (pptA) [Streptococcus pneumoniae strain PZ900701541]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGGAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704

Multiple sequence alignment