Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ACOCIG_RS03005 | Genome accession | NZ_CP184607 |
| Coordinates | 619654..620169 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CQPMC-AB14 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 614654..625169
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCIG_RS02980 (ACOCIG_02980) | - | 615200..616843 (+) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
| ACOCIG_RS02985 (ACOCIG_02985) | - | 616836..617321 (+) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| ACOCIG_RS02990 (ACOCIG_02990) | - | 617404..617757 (+) | 354 | WP_000457787.1 | DMT family transporter | - |
| ACOCIG_RS02995 (ACOCIG_02995) | - | 617800..618243 (-) | 444 | WP_001176580.1 | VOC family protein | - |
| ACOCIG_RS03000 (ACOCIG_03000) | - | 618370..619545 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ACOCIG_RS03005 (ACOCIG_03005) | fimT | 619654..620169 (-) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| ACOCIG_RS03010 (ACOCIG_03010) | omp38 | 620551..621621 (+) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| ACOCIG_RS03015 (ACOCIG_03015) | - | 621746..621889 (-) | 144 | WP_162138624.1 | hypothetical protein | - |
| ACOCIG_RS03020 (ACOCIG_03020) | - | 621908..623113 (-) | 1206 | WP_000512707.1 | RtcB family protein | - |
| ACOCIG_RS03025 (ACOCIG_03025) | - | 623390..624850 (-) | 1461 | WP_000004971.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=987845 ACOCIG_RS03005 WP_000477147.1 619654..620169(-) (fimT) [Acinetobacter baumannii strain CQPMC-AB14]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=987845 ACOCIG_RS03005 WP_000477147.1 619654..620169(-) (fimT) [Acinetobacter baumannii strain CQPMC-AB14]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |