Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ACOCIC_RS02995 | Genome accession | NZ_CP184599 |
| Coordinates | 619656..620171 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CQPMC-AB18 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 614656..625171
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCIC_RS02970 (ACOCIC_02970) | - | 615202..616845 (+) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
| ACOCIC_RS02975 (ACOCIC_02975) | - | 616838..617323 (+) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| ACOCIC_RS02980 (ACOCIC_02980) | - | 617406..617759 (+) | 354 | WP_000457787.1 | DMT family transporter | - |
| ACOCIC_RS02985 (ACOCIC_02985) | - | 617802..618245 (-) | 444 | WP_001176580.1 | VOC family protein | - |
| ACOCIC_RS02990 (ACOCIC_02990) | - | 618372..619547 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ACOCIC_RS02995 (ACOCIC_02995) | fimT | 619656..620171 (-) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| ACOCIC_RS03000 (ACOCIC_03000) | omp38 | 620553..621623 (+) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| ACOCIC_RS03005 (ACOCIC_03005) | - | 621748..621891 (-) | 144 | WP_162138624.1 | hypothetical protein | - |
| ACOCIC_RS03010 (ACOCIC_03010) | - | 621910..623115 (-) | 1206 | WP_000512707.1 | RtcB family protein | - |
| ACOCIC_RS03015 (ACOCIC_03015) | - | 623392..624852 (-) | 1461 | WP_000004971.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=987545 ACOCIC_RS02995 WP_000477147.1 619656..620171(-) (fimT) [Acinetobacter baumannii strain CQPMC-AB18]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=987545 ACOCIC_RS02995 WP_000477147.1 619656..620171(-) (fimT) [Acinetobacter baumannii strain CQPMC-AB18]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGGCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGGCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |