Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VAE59_RS16840 Genome accession   NZ_CP152093
Coordinates   3571290..3572672 (-) Length   460 a.a.
NCBI ID   WP_010253610.1    Uniprot ID   -
Organism   Pantoea agglomerans strain FJ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3566290..3577672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAE59_RS16815 - 3567065..3567229 (+) 165 WP_109652447.1 YhfG family protein -
  VAE59_RS16820 - 3567242..3567844 (+) 603 WP_033770937.1 putative adenosine monophosphate-protein transferase Fic -
  VAE59_RS16825 - 3567825..3568721 (-) 897 WP_010253616.1 LysR family transcriptional regulator -
  VAE59_RS16830 - 3568926..3569927 (+) 1002 WP_033787413.1 zinc-binding alcohol dehydrogenase family protein -
  VAE59_RS16835 nadR 3569973..3571214 (-) 1242 WP_010253612.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  VAE59_RS16840 radA 3571290..3572672 (-) 1383 WP_010253610.1 DNA repair protein RadA Machinery gene
  VAE59_RS16845 serB 3572686..3573663 (-) 978 WP_010253608.1 phosphoserine phosphatase -
  VAE59_RS16850 - 3573771..3574421 (+) 651 WP_010253606.1 YtjB family periplasmic protein -
  VAE59_RS16855 yjjG 3575088..3575768 (-) 681 WP_010671712.1 pyrimidine 5'-nucleotidase -
  VAE59_RS16860 rimI 3575787..3576227 (-) 441 WP_010671713.1 ribosomal protein S18-alanine N-acetyltransferase -
  VAE59_RS16865 - 3576199..3576609 (-) 411 WP_022625367.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49321.96 Da        Isoelectric Point: 7.4220

>NTDB_id=987319 VAE59_RS16840 WP_010253610.1 3571290..3572672(-) (radA) [Pantoea agglomerans strain FJ2]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=987319 VAE59_RS16840 WP_010253610.1 3571290..3572672(-) (radA) [Pantoea agglomerans strain FJ2]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGTT
ATGCCGGTAGCGCCGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCCTCGCCCGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGTGTGG
CGATCATCATGGTTGGTCACGTCACCAAAGATGGTTCCCTGGCCGGACCGAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTTAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCACGCCGCGTGGCGGTAGGTCTGGAGCAGAACCGTCTGGCGATTCTGCTGGCCGTTTTACACCG
TCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTTAACGTGGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCAG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424

Multiple sequence alignment