Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ACOCH7_RS02745 | Genome accession | NZ_CP184591 |
| Coordinates | 558501..559016 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CQPMC-AB23 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 553501..564016
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCH7_RS02725 (ACOCH7_02725) | - | 553820..555280 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| ACOCH7_RS02730 (ACOCH7_02730) | - | 555557..556762 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| ACOCH7_RS02735 (ACOCH7_02735) | - | 556781..556924 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| ACOCH7_RS02740 (ACOCH7_02740) | omp38 | 557049..558119 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| ACOCH7_RS02745 (ACOCH7_02745) | fimT | 558501..559016 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| ACOCH7_RS02750 (ACOCH7_02750) | - | 559125..560300 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ACOCH7_RS02755 (ACOCH7_02755) | - | 560427..560870 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| ACOCH7_RS02760 (ACOCH7_02760) | - | 560913..561266 (-) | 354 | WP_000457787.1 | DMT family transporter | - |
| ACOCH7_RS02765 (ACOCH7_02765) | - | 561349..561834 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| ACOCH7_RS02770 (ACOCH7_02770) | - | 561827..563470 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=987319 ACOCH7_RS02745 WP_000477147.1 558501..559016(+) (fimT) [Acinetobacter baumannii strain CQPMC-AB23]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=987319 ACOCH7_RS02745 WP_000477147.1 558501..559016(+) (fimT) [Acinetobacter baumannii strain CQPMC-AB23]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |