Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ACOCHV_RS03000 | Genome accession | NZ_CP184587 |
| Coordinates | 619657..620172 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain CQPMC-AB25 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 614657..625172
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOCHV_RS02975 (ACOCHV_02975) | - | 615203..616846 (+) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
| ACOCHV_RS02980 (ACOCHV_02980) | - | 616839..617324 (+) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| ACOCHV_RS02985 (ACOCHV_02985) | - | 617407..617760 (+) | 354 | WP_000457787.1 | DMT family transporter | - |
| ACOCHV_RS02990 (ACOCHV_02990) | - | 617803..618246 (-) | 444 | WP_001176580.1 | VOC family protein | - |
| ACOCHV_RS02995 (ACOCHV_02995) | - | 618373..619548 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ACOCHV_RS03000 (ACOCHV_03000) | fimT | 619657..620172 (-) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| ACOCHV_RS03005 (ACOCHV_03005) | omp38 | 620554..621624 (+) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| ACOCHV_RS03010 (ACOCHV_03010) | - | 621749..621892 (-) | 144 | WP_162138624.1 | hypothetical protein | - |
| ACOCHV_RS03015 (ACOCHV_03015) | - | 621911..623116 (-) | 1206 | WP_000512707.1 | RtcB family protein | - |
| ACOCHV_RS03020 (ACOCHV_03020) | - | 623393..624853 (-) | 1461 | WP_000004971.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=987244 ACOCHV_RS03000 WP_000477147.1 619657..620172(-) (fimT) [Acinetobacter baumannii strain CQPMC-AB25]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=987244 ACOCHV_RS03000 WP_000477147.1 619657..620172(-) (fimT) [Acinetobacter baumannii strain CQPMC-AB25]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |