Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KNP07_RS10530 Genome accession   NZ_CP152075
Coordinates   2236445..2237080 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain NCTR 501     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2231445..2242080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNP07_RS10515 (KNP07_10515) - 2232154..2233398 (+) 1245 WP_019485501.1 lipoprotein-releasing ABC transporter permease subunit -
  KNP07_RS10520 (KNP07_10520) - 2233483..2234016 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  KNP07_RS10525 (KNP07_10525) comA 2234147..2236372 (+) 2226 WP_263465070.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KNP07_RS10530 (KNP07_10530) exbB 2236445..2237080 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KNP07_RS10535 (KNP07_10535) - 2237077..2237517 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  KNP07_RS10540 (KNP07_10540) lpxK 2237517..2238515 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  KNP07_RS10545 (KNP07_10545) - 2238553..2238738 (+) 186 WP_003091157.1 Trm112 family protein -
  KNP07_RS10550 (KNP07_10550) kdsB 2238738..2239502 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KNP07_RS10555 (KNP07_10555) - 2239502..2239966 (+) 465 WP_217385461.1 low molecular weight protein-tyrosine-phosphatase -
  KNP07_RS10560 (KNP07_10560) murB 2239963..2240982 (+) 1020 WP_034036722.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=987197 KNP07_RS10530 WP_003091163.1 2236445..2237080(+) (exbB) [Pseudomonas aeruginosa strain NCTR 501]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=987197 KNP07_RS10530 WP_003091163.1 2236445..2237080(+) (exbB) [Pseudomonas aeruginosa strain NCTR 501]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGTCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment