Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACOCH0_RS03200 Genome accession   NZ_CP184585
Coordinates   661175..661537 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain CQPMC-AB27     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 656175..666537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCH0_RS03190 (ACOCH0_03190) - 658453..660531 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  ACOCH0_RS03195 (ACOCH0_03195) - 660578..661114 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  ACOCH0_RS03200 (ACOCH0_03200) pilH 661175..661537 (-) 363 WP_000101096.1 response regulator Machinery gene
  ACOCH0_RS03205 (ACOCH0_03205) pilG 661561..661944 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ACOCH0_RS03230 (ACOCH0_03230) - 662867..663652 (-) 786 WP_001198163.1 YdcF family protein -
  ACOCH0_RS03235 (ACOCH0_03235) - 663779..666325 (-) 2547 WP_000473046.1 PepSY domain-containing protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=987171 ACOCH0_RS03200 WP_000101096.1 661175..661537(-) (pilH) [Acinetobacter baumannii strain CQPMC-AB27]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=987171 ACOCH0_RS03200 WP_000101096.1 661175..661537(-) (pilH) [Acinetobacter baumannii strain CQPMC-AB27]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment