Detailed information NTG0987131

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AAGT87_RS14390
• Genome accession: NZ_CP152071
• Coordinates: 2116319..2117326 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain Sudan_2019_18
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2111319..2122326

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAGT87_RS14370 (AAGT87_14375)	metJ	2111323..2111640 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
AAGT87_RS14375 (AAGT87_14380)	-	2111751..2113028 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
AAGT87_RS14380 (AAGT87_14385)	rpmE	2113336..2113554 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
AAGT87_RS14385 (AAGT87_14390)	priA	2113809..2116013 (+)	2205	WP_001247858.1	primosomal protein N'	-
AAGT87_RS14390 (AAGT87_14395)	cytR	2116319..2117326 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
AAGT87_RS14395 (AAGT87_14400)	-	2117498..2118049 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
AAGT87_RS14400 (AAGT87_14405)	hslV	2118186..2118743 (+)	558	WP_353495221.1	ATP-dependent protease subunit HslV	-
AAGT87_RS14405 (AAGT87_14410)	hslU	2118809..2120140 (+)	1332	WP_341261145.1	HslU--HslV peptidase ATPase subunit	-
AAGT87_RS14410 (AAGT87_14415)	-	2120244..2121161 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AAGT87_RS14415 (AAGT87_14420)	rraA	2121236..2121751 (+)	516	WP_353495222.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=987131 AAGT87_RS14390 WP_000224452.1 2116319..2117326(+) (cytR) [Vibrio cholerae strain Sudan_2019_18]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=987131 AAGT87_RS14390 WP_000224452.1 2116319..2117326(+) (cytR) [Vibrio cholerae strain Sudan_2019_18]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904