Detailed information NTG0987118

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AAGT87_RS11220
• Genome accession: NZ_CP152071
• Coordinates: 1448884..1449891 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain Sudan_2019_18
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1443884..1454891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAGT87_RS11210 (AAGT87_11215)	cysM	1445048..1445935 (+)	888	WP_341265035.1	cysteine synthase CysM	-
AAGT87_RS11215 (AAGT87_11220)	mutS	1446203..1448791 (+)	2589	WP_353495471.1	DNA mismatch repair protein MutS	-
AAGT87_RS11220 (AAGT87_11225)	rpoS	1448884..1449891 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
AAGT87_RS11225 (AAGT87_11230)	nlpD	1449965..1450900 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
AAGT87_RS11230 (AAGT87_11235)	-	1450900..1451526 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AAGT87_RS11235 (AAGT87_11240)	surE	1451519..1452271 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
AAGT87_RS11240 (AAGT87_11245)	truD	1452273..1453358 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
AAGT87_RS11245 (AAGT87_11250)	ispF	1453388..1453864 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AAGT87_RS11250 (AAGT87_11255)	ispD	1453861..1454559 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AAGT87_RS11255 (AAGT87_11260)	ftsB	1454556..1454840 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=987118 AAGT87_RS11220 WP_000116737.1 1448884..1449891(-) (rpoS) [Vibrio cholerae strain Sudan_2019_18]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=987118 AAGT87_RS11220 WP_000116737.1 1448884..1449891(-) (rpoS) [Vibrio cholerae strain Sudan_2019_18]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1