Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AAGT87_RS11080 Genome accession   NZ_CP152071
Coordinates   1422398..1422916 (-) Length   172 a.a.
NCBI ID   WP_341265031.1    Uniprot ID   -
Organism   Vibrio cholerae strain Sudan_2019_18     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417398..1427916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGT87_RS11055 (AAGT87_11060) rimM 1417507..1418061 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  AAGT87_RS11060 (AAGT87_11065) rpsP 1418089..1418337 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  AAGT87_RS11065 (AAGT87_11070) ffh 1418573..1419958 (-) 1386 WP_000462720.1 signal recognition particle protein -
  AAGT87_RS11070 (AAGT87_11075) - 1420171..1420965 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  AAGT87_RS11075 (AAGT87_11080) - 1421048..1422328 (+) 1281 WP_341265030.1 HlyC/CorC family transporter -
  AAGT87_RS11080 (AAGT87_11085) luxS 1422398..1422916 (-) 519 WP_341265031.1 S-ribosylhomocysteine lyase Regulator
  AAGT87_RS11085 (AAGT87_11090) gshA 1422965..1424539 (-) 1575 WP_000032608.1 glutamate--cysteine ligase -
  AAGT87_RS11090 (AAGT87_11095) - 1424651..1427506 (-) 2856 WP_001233047.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19096.95 Da        Isoelectric Point: 5.2199

>NTDB_id=987115 AAGT87_RS11080 WP_341265031.1 1422398..1422916(-) (luxS) [Vibrio cholerae strain Sudan_2019_18]
MPLLDSFTVDHTRMNALAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=987115 AAGT87_RS11080 WP_341265031.1 1422398..1422916(-) (luxS) [Vibrio cholerae strain Sudan_2019_18]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACTTGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994

Multiple sequence alignment