Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AAFP34_RS09085 Genome accession   NZ_CP152060
Coordinates   1927815..1929626 (-) Length   603 a.a.
NCBI ID   WP_021732147.1    Uniprot ID   A0A2I9DIM9
Organism   Lactiplantibacillus paraplantarum strain lb01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1922815..1934626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFP34_RS09060 (AAFP34_09060) - 1923416..1924054 (+) 639 WP_021732142.1 copper homeostasis protein CutC -
  AAFP34_RS09065 (AAFP34_09065) - 1924296..1925198 (-) 903 WP_033609549.1 RluA family pseudouridine synthase -
  AAFP34_RS09070 (AAFP34_09070) - 1925195..1925998 (-) 804 WP_021732144.1 NAD kinase -
  AAFP34_RS09075 (AAFP34_09075) - 1925995..1926657 (-) 663 WP_021732145.1 GTP pyrophosphokinase family protein -
  AAFP34_RS09080 (AAFP34_09080) - 1926951..1927586 (+) 636 WP_021732146.1 DsbA family protein -
  AAFP34_RS09085 (AAFP34_09085) pepF 1927815..1929626 (-) 1812 WP_021732147.1 oligoendopeptidase F Regulator
  AAFP34_RS09090 (AAFP34_09090) - 1929704..1930789 (-) 1086 WP_021732148.1 competence protein CoiA family protein -
  AAFP34_RS09095 (AAFP34_09095) - 1930988..1931719 (-) 732 WP_021732150.1 adaptor protein MecA -
  AAFP34_RS09100 (AAFP34_09100) spxA 1931855..1932253 (-) 399 WP_021732151.1 transcriptional regulator SpxA -
  AAFP34_RS09105 (AAFP34_09105) - 1932542..1933285 (-) 744 WP_021732152.1 MBL fold metallo-hydrolase -
  AAFP34_RS09110 (AAFP34_09110) - 1933426..1933926 (+) 501 WP_021732153.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67544.64 Da        Isoelectric Point: 4.9800

>NTDB_id=987069 AAFP34_RS09085 WP_021732147.1 1927815..1929626(-) (pepF) [Lactiplantibacillus paraplantarum strain lb01]
MVATKKLPTRSAVPETLTWDLTPIYADQAAYAADVAQIKATIPTVAALKDDFISSADTVLAGIQAVLDLYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILQLTPGELDTYLDENVTLRDYRHLLDTVRLQKGHVLSENEES
LLAGASDIFGASAKTFGVLNNADFQFPTVQDDDGNPVKLSQGLYGVLLESVHPAVRREAFEALYQVYGQFRRTLASTLAS
QVKVHNFVAQAHHYPDARTAALAANQIPTSVYDSLVTAVDDHLHLLHRYVALRKRLLGVDQLHMYDMYTPLAPKPTINYS
YQQAQATALQALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPQMRAYVLNYYLDGFKGTVFRQTQFAEFEEWLHEQDQAGQ
ALTADRLSKQYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLADRISTKQAGAVDDYLGYLKAG
SSAFPIDVMHGAGVDMTKPDYLDAAFKVFEERLDEFEQLVTKQ

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=987069 AAFP34_RS09085 WP_021732147.1 1927815..1929626(-) (pepF) [Lactiplantibacillus paraplantarum strain lb01]
ATGGTAGCAACTAAAAAATTGCCGACTCGTTCGGCCGTTCCTGAAACGTTGACTTGGGATCTCACGCCTATTTATGCTGA
TCAGGCTGCGTATGCGGCGGATGTCGCGCAAATCAAAGCGACAATCCCCACCGTTGCAGCACTTAAAGATGATTTTATCA
GTTCGGCCGATACGGTGCTGGCAGGGATTCAGGCGGTCTTAGACCTGTATCGACGGCTAGAAAAAGTAGCGGTATATGCT
AGTTTGAAGAGTGATCAGGACACTGGAAACAGTACGAATGCGGCTTTAGATGATCAAGCTAGTAGTTTAACAGCCAAGGT
ATCTGCAGCAACTGCTTGGTTTGAACCGGCTATTTTACAATTAACACCAGGTGAATTGGATACGTACCTTGACGAAAACG
TCACTTTACGTGATTATCGGCACTTATTAGACACGGTGCGGTTGCAAAAGGGTCACGTATTGTCTGAAAATGAAGAGTCT
TTACTGGCAGGGGCTAGCGACATCTTTGGGGCCTCAGCTAAGACGTTTGGTGTGCTAAACAATGCTGATTTTCAATTTCC
GACTGTTCAGGATGATGATGGCAATCCTGTTAAGCTCTCACAAGGGCTTTACGGCGTGTTACTAGAGTCCGTCCATCCGG
CAGTCCGACGTGAAGCTTTTGAGGCATTATATCAAGTATACGGCCAATTTCGGCGCACACTTGCCTCGACACTTGCCAGC
CAAGTCAAAGTGCATAATTTTGTGGCCCAAGCCCACCATTATCCCGATGCGCGAACAGCCGCGTTAGCTGCTAATCAAAT
TCCAACGTCGGTTTATGATTCTTTAGTTACGGCTGTCGATGATCACTTGCATTTGTTGCATCGTTACGTGGCGCTACGTA
AGCGCCTATTAGGTGTAGATCAGTTGCATATGTATGATATGTATACGCCGTTAGCACCCAAACCGACAATCAATTATTCT
TATCAACAGGCGCAGGCAACGGCTTTACAGGCACTGAAAATTTTAGGCCCCGACTATCTCAAACATGTAAAAACGGCTTT
TGCTTCACGGTGGATCGACGTTGTGGAAAATCAGGGCAAACGCAGTGGTGCTTATTCGTCAGGAATGTATGATACTGCGC
CGTATATGTTATTGAATTGGCAGGATAATATTGATAATTTATACACGTTGGTCCATGAAATGGGTCATAGCATGCATTCT
TATTTCACGACGCATCATCAGCCTTATCAATATGGTGACTATTCAATTTTTGTGGCGGAAATCGCCTCAACTACTAACGA
GAATTTGCTGACTAATTATTTTCTGGCAACTGAACAGGACCCCCAGATGCGGGCCTATGTCTTGAATTATTACCTAGATG
GCTTTAAGGGGACCGTTTTCCGTCAAACCCAATTTGCAGAATTCGAAGAATGGTTACACGAACAAGATCAAGCTGGCCAA
GCTTTGACTGCTGACCGGTTATCAAAACAGTACTTGCAGTTGAATCAACGCTATTACGGTGATGCAGTGGTCAGTGATCC
ACAGATTGCCGATGAATGGTCGCGTATTCCACACTTCTATTACAATTACTATGTTTACCAGTATGCCACGGGTTTTGCGG
CCGCCTCGACGCTAGCCGACCGAATTAGTACCAAGCAGGCGGGGGCCGTTGATGACTATTTAGGCTATTTGAAAGCAGGT
TCTTCAGCGTTTCCAATTGATGTCATGCACGGAGCTGGTGTTGATATGACCAAGCCAGATTATCTAGATGCAGCTTTCAA
GGTTTTTGAAGAACGACTAGATGAATTTGAACAGTTAGTGACGAAGCAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I9DIM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.347

98.507

0.506

Multiple sequence alignment