Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NYE63_RS18775 Genome accession   NZ_CP152053
Coordinates   3858341..3860056 (-) Length   571 a.a.
NCBI ID   WP_148358711.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3853341..3865056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE63_RS18760 (NYE63_18755) - 3855032..3855268 (+) 237 WP_101222519.1 DUF2627 domain-containing protein -
  NYE63_RS18765 (NYE63_18760) spo0A 3855765..3856556 (-) 792 WP_342602254.1 sporulation transcription factor Spo0A -
  NYE63_RS18770 (NYE63_18765) spoIVB 3856886..3858178 (-) 1293 WP_063233098.1 SpoIVB peptidase -
  NYE63_RS18775 (NYE63_18770) recN 3858341..3860056 (-) 1716 WP_148358711.1 DNA repair protein RecN Machinery gene
  NYE63_RS18780 (NYE63_18775) argR 3860079..3860528 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  NYE63_RS18785 (NYE63_18780) - 3860843..3861670 (-) 828 WP_251431023.1 TlyA family RNA methyltransferase -
  NYE63_RS18790 (NYE63_18785) dxs 3861675..3863567 (-) 1893 WP_063233180.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NYE63_RS18795 (NYE63_18790) - 3863817..3864710 (-) 894 WP_342602255.1 polyprenyl synthetase family protein -
  NYE63_RS18800 (NYE63_18795) - 3864712..3864945 (-) 234 WP_342602256.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64474.35 Da        Isoelectric Point: 5.2172

>NTDB_id=987019 NYE63_RS18775 WP_148358711.1 3858341..3860056(-) (recN) [Peribacillus sp. FSL E2-0159]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKVKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=987019 NYE63_RS18775 WP_148358711.1 3858341..3860056(-) (recN) [Peribacillus sp. FSL E2-0159]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGGGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTTTTGGTTGGGGGGCGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCTAAGGCCGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAATTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGACATCTCACAGAGCGGCAAAAGCGTTTG
CAGGGTAAATGGAAAGCTTGTAACGATTTCCACTTTACGAGAGATAGGACGGACATTGATAGATATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTCCCGCTACTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAGCGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAGACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCTGTAGCCATGAATAATTTGGAGGAAGCAGCAGGGCTAGATGAAGGTTTAAAGAA
CAGCTCTGAGACCGTTTCAAATAGCTACTTCCTGCTTGAAGAGGCCGTGTCAAACATCCGAGACCAATTAGACTCTTTGG
ATTATGATACTGAACGTGTGGAATTCATTGAAAGTCGCCTTAATGAAATAAATCAATTAAAGCGTAAATACGGGAGGACC
ATCGAGGAAATCCTGGAATATGGAGCCGCTATAGAAGAAGAAGTAGAAAAACTGCAAAATAGGGAAACCCATATAGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATTTAATTGTCGAAGCAAAGAATCTTTCTGAACTTCGGCAGAAATTCG
CTCAGCAGTTAACCAAAAAGATCCATCAGGAATTAAAAGATTTATACATGGAAAAGACAATTTTCGAACCGCATTTCCTT
CAAACGGCCTATACCTTCGATGAATTGTCAGATAGGGGCATTAATCAGTCAGGTCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGCGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCACCAAGGCATAACGTCCATTATATTTGATGAAGTGGACACAGGTGTGAGCGGACGGGTTGCA
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTACTGTGCATATCCCATTTGCCACAGGTGGCAGC
TATGGCGGATACTCACCTTTTCATAGCTAAAAATGTAAGGGCTGGACGCACGAATACCTCGGTCAAGCCGCTCATTGAAA
CTGAAAAAGTAAAAGAAATTGGCAGGATGATTTCAGGAGTAGAGATAACGGATTTGACGAAGCAGCATGCCAATGAATTA
ATCCAGCTGGCCAAACGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.615

Multiple sequence alignment