Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYE63_RS16095 Genome accession   NZ_CP152053
Coordinates   3312293..3312649 (+) Length   118 a.a.
NCBI ID   WP_342605790.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0159     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3307293..3317649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE63_RS16070 (NYE63_16065) - 3308223..3308690 (-) 468 WP_342601864.1 MarR family transcriptional regulator -
  NYE63_RS16075 (NYE63_16070) - 3308896..3309813 (+) 918 WP_342601865.1 EamA family transporter -
  NYE63_RS16080 (NYE63_16075) panE 3309977..3310891 (+) 915 WP_342601866.1 2-dehydropantoate 2-reductase -
  NYE63_RS16085 (NYE63_16080) - 3311338..3311637 (+) 300 WP_342601867.1 hypothetical protein -
  NYE63_RS16090 (NYE63_16085) - 3312032..3312241 (+) 210 WP_142303872.1 hypothetical protein -
  NYE63_RS16095 (NYE63_16090) nucA/comI 3312293..3312649 (+) 357 WP_342605790.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYE63_RS16100 (NYE63_16095) - 3313091..3314110 (-) 1020 WP_342601868.1 hypothetical protein -
  NYE63_RS16105 (NYE63_16100) - 3314345..3315775 (+) 1431 WP_342601869.1 IS4 family transposase -
  NYE63_RS16110 (NYE63_16105) - 3315903..3316259 (+) 357 Protein_3124 recombinase family protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13118.29 Da        Isoelectric Point: 3.9017

>NTDB_id=987016 NYE63_RS16095 WP_342605790.1 3312293..3312649(+) (nucA/comI) [Peribacillus sp. FSL E2-0159]
MKVKECLSEESYNVVINFPSEKYPETAEHIEDAIADGSSNICTIDRNGADENRDESLENIQTRMGYDRDEYPMAMCEEGG
AGADIEYITPSDNRGAGSWVSHLLSDYPDGTKVLFVVE

Nucleotide


Download         Length: 357 bp        

>NTDB_id=987016 NYE63_RS16095 WP_342605790.1 3312293..3312649(+) (nucA/comI) [Peribacillus sp. FSL E2-0159]
ATCAAAGTAAAGGAGTGTTTATCTGAGGAAAGTTATAATGTTGTAATTAACTTTCCGTCAGAAAAGTACCCGGAGACAGC
TGAGCATATAGAAGATGCCATTGCTGATGGAAGTTCCAATATTTGTACCATTGATAGAAATGGAGCAGACGAGAATCGTG
ATGAATCTTTGGAAAATATTCAAACTAGAATGGGATATGATCGTGATGAATACCCAATGGCCATGTGTGAAGAAGGGGGA
GCGGGAGCAGATATTGAGTATATAACCCCATCAGACAATCGTGGTGCTGGCTCGTGGGTATCTCATCTTTTAAGTGACTA
TCCCGATGGTACAAAGGTTTTATTCGTTGTAGAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(22-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.551

90.678

0.576

Multiple sequence alignment