Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYE63_RS00565 Genome accession   NZ_CP152053
Coordinates   106556..107944 (+) Length   462 a.a.
NCBI ID   WP_342603727.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101556..112944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE63_RS00545 (NYE63_00545) - 101678..102139 (+) 462 WP_098373579.1 CtsR family transcriptional regulator -
  NYE63_RS00550 (NYE63_00550) - 102161..102712 (+) 552 WP_342603725.1 UvrB/UvrC motif-containing protein -
  NYE63_RS00555 (NYE63_00555) - 102709..103785 (+) 1077 WP_342603726.1 protein arginine kinase -
  NYE63_RS00560 (NYE63_00560) clpC 103916..106357 (+) 2442 WP_063235778.1 ATP-dependent protease ATP-binding subunit ClpC -
  NYE63_RS00565 (NYE63_00565) radA 106556..107944 (+) 1389 WP_342603727.1 DNA repair protein RadA Machinery gene
  NYE63_RS00570 (NYE63_00570) disA 107947..109020 (+) 1074 WP_063235780.1 DNA integrity scanning diadenylate cyclase DisA -
  NYE63_RS00575 (NYE63_00575) - 109247..110344 (+) 1098 WP_063235781.1 PIN/TRAM domain-containing protein -
  NYE63_RS00580 (NYE63_00580) ispD 110366..111052 (+) 687 WP_342603728.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NYE63_RS00585 (NYE63_00585) ispF 111067..111546 (+) 480 WP_342603729.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50230.89 Da        Isoelectric Point: 8.2388

>NTDB_id=986999 NYE63_RS00565 WP_342603727.1 106556..107944(+) (radA) [Peribacillus sp. FSL E2-0159]
MAVKKKTKFMCQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRGSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYAETDM
DYIQQAITEVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPTDCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIVGVSSVSEALKQTLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=986999 NYE63_RS00565 WP_342603727.1 106556..107944(+) (radA) [Peribacillus sp. FSL E2-0159]
ATGGCTGTAAAGAAGAAAACGAAATTTATGTGTCAGTCTTGTGGTTATGAGTCCGCGAAATGGATGGGGAAATGTCCAGG
ATGCGGTGAATGGAACAAAATGGTCGAGGAAACCGAAATTGTTAAACCAGCTAGAAAAGGCGCTTTTACCCATTCAGAGG
TTAGAGGTTCCGGGGAACGGGAGAAGGCAGCACCCATAACGACTATTCAATCAGAAAAAGAACCACGGATTAAGACGGAT
TTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTACAGGGATCCCTTGTATTGATTGGTGGGGACCCGGGTATCGG
TAAGTCGACCCTGCTTTTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATATCAGGTGAAGAAT
CAGTCAAGCAGACCAAATTGAGAGCGGACCGGCTTGGGACCATGTCGGAAAATCTATTCGTTTATGCTGAAACCGATATG
GACTACATCCAACAGGCAATTACAGAGGTAAAACCGGATTTGGTCATTATTGACTCCATTCAAACGGTATACCATTCAGA
GGTTACATCTGCCCCAGGAAGCGTTTCACAAGTGAGGGAATGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGGA
TCGCGATTTTTATCGTCGGACACGTTACAAAGGAAGGGGCCATTGCGGGGCCACGGCTGCTTGAGCACATGGTTGACACC
GTATTATATTTTGAAGGAGAAAGACACCATACATATCGAATTATACGTGCGGTCAAAAATCGCTTTGGTTCGACGAATGA
GATGGGTATTTTTGAGATGAAAGAACATGGATTGGAAGAGGTCGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AAGGAGCTTCGGGCTCCACAGTCGTCGCATCCATGGAGGGCACAAGGCCAGTGCTTGTAGAAATTCAAGCATTGATTTCA
CCAACGAGTTTTGGCAACCCAAGACGAATGGCCACGGGAATTGACCACAATCGAGTTTCGCTTTTAATGGCTGTTCTGGA
AAAGAGAGTTGGATTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCTGGTGGCGTCAAGCTGGATGAACCGGCAA
TTGACCTCGCTGTTGCAATAAGCATTGCATCAAGCTTCCGTGATAAACCAACAAACCCTACCGATTGCATCATTGGTGAA
GTGGGGCTGACTGGGGAAGTAAGAAGGGTTTCACGAATTGAACAAAGGGTGCAGGAAGCAGCGAAGTTAGGGTTTGAGCG
GGTTATAATACCGGCTAATAATATAGGAGGATGGACCGCGCCGAAAGGTATTAAGATCGTTGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAAACGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.957

99.567

0.766
  radA Streptococcus mitis NCTC 12261

61.707

98.918

0.61
  radA Streptococcus mitis SK321

61.488

98.918

0.608
  radA Streptococcus pneumoniae TIGR4

61.269

98.918

0.606
  radA Streptococcus pneumoniae R6

61.269

98.918

0.606
  radA Streptococcus pneumoniae Rx1

61.269

98.918

0.606
  radA Streptococcus pneumoniae D39

61.269

98.918

0.606

Multiple sequence alignment