Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MHB48_RS13010 Genome accession   NZ_CP152052
Coordinates   2713348..2715765 (-) Length   805 a.a.
NCBI ID   WP_342598463.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL H8-0483     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2708348..2720765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB48_RS12990 (MHB48_12990) - 2709316..2709609 (-) 294 WP_340922011.1 DUF1292 domain-containing protein -
  MHB48_RS12995 (MHB48_12995) ruvX 2709621..2710040 (-) 420 WP_342598461.1 Holliday junction resolvase RuvX -
  MHB48_RS13000 (MHB48_13000) - 2710043..2710309 (-) 267 WP_053588802.1 IreB family regulatory phosphoprotein -
  MHB48_RS13005 (MHB48_13005) alaS 2710385..2713018 (-) 2634 WP_342598462.1 alanine--tRNA ligase -
  MHB48_RS13010 (MHB48_13010) recD2 2713348..2715765 (-) 2418 WP_342598463.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MHB48_RS13015 (MHB48_13015) - 2715899..2716555 (-) 657 WP_342598464.1 tetratricopeptide repeat protein -
  MHB48_RS13020 (MHB48_13020) mnmA 2716570..2717682 (-) 1113 WP_342598465.1 tRNA 2-thiouridine(34) synthase MnmA -
  MHB48_RS13025 (MHB48_13025) - 2717715..2718845 (-) 1131 WP_342598466.1 cysteine desulfurase family protein -
  MHB48_RS13030 (MHB48_13030) - 2718856..2719278 (-) 423 WP_342598467.1 Rrf2 family transcriptional regulator -
  MHB48_RS13035 (MHB48_13035) - 2719426..2720712 (+) 1287 WP_342598468.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 90125.63 Da        Isoelectric Point: 5.6165

>NTDB_id=986979 MHB48_RS13010 WP_342598463.1 2713348..2715765(-) (recD2) [Psychrobacillus sp. FSL H8-0483]
MTSEMNNEKQFITGRPIVSIFHNPQNLFSIIKLKVKSTNTTYPDKEIIVTGYFPSLVLEEAYKFTGLIKNHPKYGVQFQV
ETFQKEVPATEQGIVHYLSSDMFPGIGRKTAEQIVKKLGQNAINKILDDPAALDVIPKLGEDKKQTLRAVLEQNLGLEKV
MIQLNEWGFGPQIAMKIYQAYREETIVVLTKNPYRLIEEVEGVGFVRADELGYKLGIQGNHPDRIKAAIYHLIQSASLSE
GHVYMYAEQLLESVKRLLESAQREEIPFEAITKCCIELSEESRIVGEVNRFYIPSLYFSEVGISSKIETLLGENDTHHKF
PLAEMKKHLGGLEERLGVQYAATQIKAIETALNSSITLLTGGPGTGKTTVVRGIVELYAELHGLSLDPKEWAKDKKPFPV
VLAAPTGRAAKRLSESTELPAMTIHRLLGFTGQEDADVEGKEIEGKLVIIDETSMLDTWLGHQLLKAIPKDAQVIFVGDQ
DQLPPVGPGQVLKDLLASKRIPTVELKDIYRQSEGSSIIELAHDMKKGSVPSTLLDKTRDRSFIKASAEQIPKVVEQVLK
SALSKGHSIRDIQVLAPMYRGPAGIDALNKMIQEMVNPNTDGKRKEMVFGDTIYRIGDKVLQLVNQPESNVFNGDMGEVV
SIFKAAETVEKKEMLVISFDGNEVTYEKNDLNQITLAYCCSVHKSQGSEFQTVIMPVTRSYMKMLRRNLLYTGITRAKNF
LILCGEPEVFKFGVERTDDLQRLTTLKNRLTVREDLSEEQSEIVKEDSTEVLVEATYLTADNYHLIDPLIGMNGITPYQF
LDADN

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=986979 MHB48_RS13010 WP_342598463.1 2713348..2715765(-) (recD2) [Psychrobacillus sp. FSL H8-0483]
ATGACAAGCGAAATGAACAATGAAAAACAGTTTATAACGGGTCGTCCTATCGTCTCTATTTTTCATAATCCTCAAAACCT
ATTTTCTATTATTAAATTAAAAGTAAAATCTACAAATACTACATATCCAGACAAAGAAATCATCGTAACTGGTTATTTCC
CCTCACTTGTTCTAGAAGAAGCATATAAATTTACTGGACTTATTAAAAATCACCCTAAATATGGAGTCCAGTTCCAAGTG
GAGACCTTTCAAAAAGAGGTTCCTGCTACGGAACAAGGAATTGTCCATTATTTATCCAGTGATATGTTCCCTGGTATTGG
ACGAAAAACAGCAGAACAAATCGTGAAAAAACTGGGTCAAAATGCGATTAATAAAATTCTGGATGATCCAGCTGCATTAG
ATGTGATTCCAAAACTCGGGGAAGATAAAAAACAAACTTTGCGAGCGGTGCTAGAGCAAAACCTTGGTTTAGAAAAAGTA
ATGATCCAGCTGAATGAATGGGGCTTTGGACCTCAAATCGCCATGAAAATATATCAGGCATACCGAGAAGAAACAATTGT
AGTACTGACAAAAAATCCATACCGACTAATCGAAGAAGTAGAAGGGGTAGGATTTGTTCGTGCAGATGAACTGGGGTATA
AACTTGGTATTCAAGGAAATCATCCTGATCGAATCAAAGCCGCTATTTATCATTTAATACAATCAGCATCCTTAAGCGAA
GGACATGTATATATGTATGCTGAGCAACTATTAGAATCCGTCAAGAGGTTGCTAGAAAGCGCGCAACGGGAAGAAATTCC
GTTTGAAGCAATAACGAAATGTTGTATTGAACTATCGGAGGAAAGCCGTATTGTAGGTGAAGTTAATCGTTTTTATATCC
CTTCTCTTTATTTTTCAGAAGTAGGCATAAGCTCCAAAATCGAAACGTTACTTGGCGAAAATGATACCCATCATAAATTT
CCACTAGCGGAGATGAAAAAGCATTTGGGTGGATTGGAAGAACGTTTAGGTGTGCAATATGCTGCGACACAAATAAAGGC
AATTGAAACCGCTCTAAATTCTAGTATTACTTTACTCACAGGGGGCCCAGGTACCGGGAAAACGACAGTTGTTAGAGGAA
TTGTAGAATTATATGCTGAACTTCATGGACTTTCTTTGGATCCAAAGGAATGGGCGAAAGACAAAAAGCCATTTCCTGTT
GTTTTGGCCGCTCCTACTGGGAGGGCAGCCAAACGATTAAGTGAGTCCACCGAGTTACCTGCCATGACGATACACCGCTT
ATTAGGGTTCACAGGGCAGGAAGATGCCGATGTGGAAGGAAAAGAAATTGAGGGGAAATTAGTCATTATTGATGAAACGT
CAATGCTCGATACATGGCTAGGACACCAACTTTTAAAAGCAATTCCAAAAGACGCTCAAGTTATTTTCGTTGGCGACCAA
GATCAATTACCACCTGTTGGTCCTGGACAAGTATTAAAGGATTTATTAGCTTCTAAACGAATTCCAACAGTAGAACTAAA
AGATATTTATCGACAGTCGGAAGGATCTTCCATTATTGAACTAGCACACGACATGAAAAAAGGATCGGTGCCGTCAACTT
TATTGGACAAAACAAGAGACCGTTCATTTATTAAAGCTTCCGCTGAACAAATTCCTAAAGTAGTGGAACAAGTGCTGAAA
AGTGCTCTTTCAAAAGGTCATTCCATTCGAGATATTCAAGTACTTGCCCCGATGTACCGAGGACCTGCTGGAATAGATGC
ATTAAATAAGATGATTCAAGAAATGGTTAATCCTAATACAGATGGCAAACGTAAAGAGATGGTATTCGGAGATACGATTT
ATCGAATAGGTGATAAAGTATTACAGCTTGTCAATCAGCCGGAAAGTAATGTGTTTAATGGCGATATGGGTGAAGTTGTA
AGTATTTTTAAAGCCGCTGAAACAGTCGAAAAGAAAGAAATGCTCGTCATTTCGTTTGATGGCAATGAAGTGACTTATGA
AAAAAATGATTTGAACCAAATTACATTAGCTTATTGCTGTTCGGTTCATAAATCTCAAGGTAGTGAGTTTCAAACGGTTA
TCATGCCAGTAACAAGAAGTTACATGAAAATGCTTCGTCGAAACTTATTGTATACAGGTATTACAAGAGCAAAAAACTTT
TTAATATTATGTGGAGAACCGGAAGTATTTAAGTTTGGTGTAGAGAGAACGGATGATCTTCAACGATTAACCACTTTAAA
GAACCGATTAACGGTGAGGGAAGATCTATCAGAGGAACAGTCGGAAATAGTGAAGGAGGATTCTACTGAAGTTTTGGTAG
AAGCTACTTACCTAACCGCTGATAATTACCATTTAATTGATCCATTAATCGGTATGAATGGTATAACGCCATATCAATTT
TTGGATGCAGACAATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-244)

AAA domain (AAA_30)

(340-547)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-656)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.762

99.13

0.543

Multiple sequence alignment