Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MHB48_RS12345 Genome accession   NZ_CP152052
Coordinates   2587645..2589348 (-) Length   567 a.a.
NCBI ID   WP_342598360.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL H8-0483     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2582645..2594348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB48_RS12320 (MHB48_12320) - 2582647..2582898 (+) 252 WP_342598355.1 DUF2627 domain-containing protein -
  MHB48_RS12325 (MHB48_12325) - 2582905..2583624 (-) 720 WP_342598356.1 glycerophosphodiester phosphodiesterase family protein -
  MHB48_RS12330 (MHB48_12330) - 2583617..2585188 (-) 1572 WP_342598357.1 FapA family protein -
  MHB48_RS12335 (MHB48_12335) spo0A 2585570..2586361 (-) 792 WP_342598358.1 sporulation transcription factor Spo0A -
  MHB48_RS12340 (MHB48_12340) - 2586593..2587549 (-) 957 WP_342598359.1 SpoIVB peptidase S55 domain-containing protein -
  MHB48_RS12345 (MHB48_12345) recN 2587645..2589348 (-) 1704 WP_342598360.1 DNA repair protein RecN Machinery gene
  MHB48_RS12350 (MHB48_12350) argR 2589365..2589814 (-) 450 WP_342598361.1 transcriptional regulator ArgR -
  MHB48_RS12355 (MHB48_12355) - 2589913..2590731 (-) 819 WP_342598362.1 TlyA family RNA methyltransferase -
  MHB48_RS12360 (MHB48_12360) dxs 2590728..2592623 (-) 1896 WP_342598363.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MHB48_RS12365 (MHB48_12365) - 2592712..2593596 (-) 885 WP_342598364.1 polyprenyl synthetase family protein -
  MHB48_RS12370 (MHB48_12370) xseB 2593589..2593810 (-) 222 WP_342598365.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63997.27 Da        Isoelectric Point: 4.9047

>NTDB_id=986976 MHB48_RS12345 WP_342598360.1 2587645..2589348(-) (recN) [Psychrobacillus sp. FSL H8-0483]
MLKELSIKNFAIIDELTVSFEEGLTVLTGETGAGKSIIIDAVHLLCGGRGSQEFIRHGAKKAELEGLFIITNPSHSVFKK
MTDVGIDIDEDTIILRRDINDSGKSVCRVNGKLVTIGILREIGASLIDIHGQHESQELMDDKAHIYLLDQFAGEELKVVK
EAYKELFAKYKKWKKELAILTENEQQIAHKIDLFTFQVEEIQEAQLRIGEEDQLLEEKKKLLNFHKVFDKMSSAYEAILA
ESRGLDYIGTAMADLRDISDVDKNMHELSENVSSAFYMLQDAAYQLKNELDEMEYDSNQLLVVEDRLALIQTLKRKYGAS
IEEILQYQEKVQHSLDQLVNRDEQIQRMTEKIRQIEIDLELEANDLTDKRKIAANLLSEAIMEQLQELYMEKATFSVMFH
ESLKSAYNENGLDELSFYISTNVGEPPKALTKIASGGELSRMMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAIATNSQVLCISHLSQVAAMADQHLMIKKEVAGNRTFTMLEEVTDEKRAEELSRMMSGAEITSTTLQHSKELLKLAKNR
KKVLRNA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=986976 MHB48_RS12345 WP_342598360.1 2587645..2589348(-) (recN) [Psychrobacillus sp. FSL H8-0483]
TTGTTAAAGGAATTATCCATTAAAAATTTTGCCATTATTGATGAACTCACAGTGAGCTTTGAAGAGGGACTTACTGTGTT
AACTGGAGAGACAGGCGCAGGGAAATCCATTATTATTGATGCTGTTCACTTATTATGCGGTGGAAGAGGCTCTCAGGAAT
TTATCCGTCATGGAGCTAAAAAAGCGGAACTAGAAGGCTTATTTATCATTACCAATCCCAGCCATAGTGTCTTTAAAAAA
ATGACAGACGTTGGAATTGACATTGACGAAGATACAATTATTTTAAGAAGAGACATTAATGATTCTGGCAAAAGCGTTTG
TCGAGTGAACGGGAAACTTGTCACTATAGGAATTTTGAGAGAAATTGGCGCATCCTTAATAGATATTCACGGTCAACATG
AAAGCCAAGAACTAATGGATGACAAGGCACATATTTATCTACTGGATCAATTTGCAGGTGAAGAGCTAAAAGTTGTGAAA
GAGGCGTATAAAGAGCTATTTGCAAAATATAAAAAGTGGAAAAAAGAGCTTGCTATATTAACAGAAAATGAGCAACAAAT
CGCCCATAAAATTGATTTATTTACGTTCCAAGTAGAAGAAATTCAAGAAGCCCAATTAAGGATTGGGGAAGAAGACCAGC
TCCTGGAAGAAAAAAAGAAGCTACTAAACTTCCACAAAGTTTTCGACAAAATGAGCAGTGCATATGAAGCTATCCTAGCA
GAATCTAGAGGACTGGATTATATAGGAACAGCGATGGCAGATTTACGGGATATTTCAGATGTTGATAAAAATATGCATGA
GCTAAGCGAAAATGTATCTTCGGCATTTTATATGCTACAAGATGCTGCATATCAATTAAAAAATGAATTGGACGAAATGG
AATACGATAGTAATCAATTGCTAGTTGTAGAGGACCGACTCGCGCTCATTCAAACGCTGAAAAGAAAATATGGGGCTTCG
ATTGAAGAGATTTTACAATATCAAGAGAAAGTTCAACATAGCCTCGATCAGTTAGTTAATCGTGATGAACAAATACAAAG
GATGACTGAAAAAATTCGTCAGATTGAAATTGATCTAGAGTTAGAGGCTAACGACTTAACGGACAAGCGTAAAATTGCTG
CAAATCTATTAAGTGAAGCGATTATGGAGCAACTGCAAGAGCTCTATATGGAAAAAGCTACATTCTCAGTCATGTTTCAT
GAGTCATTGAAATCAGCTTATAATGAAAATGGATTAGATGAATTATCTTTTTATATTTCAACTAATGTTGGGGAGCCGCC
TAAAGCGCTCACAAAAATTGCATCTGGTGGGGAATTGTCTCGAATGATGCTAGCACTTAAAAGTATATTCTCTAAGCACC
AAGGAATTACTTCTATCATATTTGATGAGGTTGACACAGGAGTTAGTGGACGCGTGGCTCAAGCAATAGCTGAAAAAATT
GCAGCGATTGCTACTAACTCACAAGTATTATGTATTTCCCATTTGTCACAAGTTGCGGCGATGGCCGATCAGCATTTAAT
GATTAAAAAAGAGGTAGCGGGAAATCGAACATTTACGATGCTCGAAGAGGTAACTGATGAAAAACGAGCAGAGGAACTAA
GTCGTATGATGTCTGGTGCAGAAATAACAAGTACCACCTTACAGCATTCAAAAGAATTGCTTAAATTAGCCAAAAATCGA
AAAAAAGTTTTACGAAATGCGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.091

100

0.527

Multiple sequence alignment