Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   R8615_RS09215 Genome accession   NZ_AP026929
Coordinates   1800069..1801106 (-) Length   345 a.a.
NCBI ID   WP_000727276.1    Uniprot ID   A0AAQ2ZXI6
Organism   Streptococcus pneumoniae strain PZ900701114     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1795069..1806106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8615_RS09190 (PC1101_18090) - 1795808..1797139 (-) 1332 WP_016398203.1 hemolysin family protein -
  R8615_RS09195 (PC1101_18100) endA 1797430..1798254 (-) 825 WP_001036786.1 DNA-entry nuclease EndA Machinery gene
  R8615_RS09200 (PC1101_18110) - 1798293..1798481 (-) 189 WP_001813390.1 DNA-directed RNA polymerase subunit beta -
  R8615_RS09205 (PC1101_18120) murA 1798474..1799757 (-) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  R8615_RS09210 (PC1101_18130) - 1799781..1800011 (-) 231 WP_000250392.1 DUF1146 family protein -
  R8615_RS09215 (PC1101_18140) sepM 1800069..1801106 (-) 1038 WP_000727276.1 SepM family pheromone-processing serine protease Regulator
  R8615_RS09220 (PC1101_18150) coaD 1801090..1801578 (-) 489 WP_001280742.1 pantetheine-phosphate adenylyltransferase -
  R8615_RS09225 (PC1101_18160) rsmD 1801568..1802107 (-) 540 WP_000706962.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  R8615_RS09230 (PC1101_18170) asnA 1802172..1803164 (-) 993 WP_000747993.1 aspartate--ammonia ligase -
  R8615_RS09235 (PC1101_18180) - 1803276..1803959 (-) 684 WP_001016913.1 Bax inhibitor-1/YccA family protein -
  R8615_RS09240 (PC1101_18190) - 1804015..1804755 (-) 741 WP_000152701.1 RNA methyltransferase -
  R8615_RS09245 (PC1101_18200) - 1804789..1805067 (+) 279 WP_001174613.1 acylphosphatase -
  R8615_RS09250 (PC1101_18210) yidC 1805145..1806071 (+) 927 WP_000835948.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37553.61 Da        Isoelectric Point: 5.0724

>NTDB_id=98690 R8615_RS09215 WP_000727276.1 1800069..1801106(-) (sepM) [Streptococcus pneumoniae strain PZ900701114]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHLDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=98690 R8615_RS09215 WP_000727276.1 1800069..1801106(-) (sepM) [Streptococcus pneumoniae strain PZ900701114]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACTTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGGCTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGCCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCTGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.357

99.13

0.588


Multiple sequence alignment