Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MHH33_RS07450 Genome accession   NZ_CP152050
Coordinates   1396298..1398652 (+) Length   784 a.a.
NCBI ID   WP_342543413.1    Uniprot ID   -
Organism   Paenisporosarcina sp. FSL H8-0542     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1391298..1403652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH33_RS07435 (MHH33_07435) - 1392868..1393218 (+) 351 WP_036659635.1 post-transcriptional regulator -
  MHH33_RS07440 (MHH33_07440) secDF 1393327..1395609 (+) 2283 WP_342543410.1 protein translocase subunit SecDF -
  MHH33_RS07445 (MHH33_07445) - 1395724..1396146 (+) 423 WP_016426817.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  MHH33_RS07450 (MHH33_07450) recJ 1396298..1398652 (+) 2355 WP_342543413.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MHH33_RS07455 (MHH33_07455) - 1398643..1399155 (+) 513 WP_342543414.1 adenine phosphoribosyltransferase -
  MHH33_RS07460 (MHH33_07460) - 1399335..1401530 (+) 2196 WP_016426820.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MHH33_RS07465 (MHH33_07465) dtd 1401541..1401981 (+) 441 WP_342543415.1 D-aminoacyl-tRNA deacylase -
  MHH33_RS07470 (MHH33_07470) - 1402368..1402847 (+) 480 WP_342543416.1 DUF2975 domain-containing protein -
  MHH33_RS07475 (MHH33_07475) - 1402856..1403059 (+) 204 WP_342543417.1 helix-turn-helix transcriptional regulator -
  MHH33_RS07480 (MHH33_07480) - 1403090..1403308 (+) 219 WP_342543418.1 DUF3955 domain-containing protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88233.11 Da        Isoelectric Point: 5.0886

>NTDB_id=986871 MHH33_RS07450 WP_342543413.1 1396298..1398652(+) (recJ) [Paenisporosarcina sp. FSL H8-0542]
MIESKKRWRMERPDDQIVQHLKEALNLPTVSAKLLASRGFSDVNKTKAFLHMDESSMHDPFLLHDMDKAVERIKKAIADE
EMILVYGDYDADGVTSTSVMMTALQQLNANVMFAIPNRFVDGYGPSERLFKEAFEDGVSLIITVDNGISGINEIQLAKEL
GMDVIVTDHHEAGEILPPADAIIHPRHPLGSYPFGELAGVGVAFKVAHALLGEVPKELLELVAIGTIADLVSLHDENRYF
VQAGIKQLRMSKRPAIKALCQIAGTEQNQINEETIGFMFGPRINALGRLADAGPGVDMFLTTDSVEAASLAKVLDTHNKE
RQGIVSQMTEEAIAMVESGDIGKNPLVIVVAKEGWNPGVVGIVASRLVEKYYRPTIVLGLDSEKGIAKGSARSIEGFHLY
NELAKNRDILPHFGGHPMAAGMTLPLEKVTDLRTRLLEQAEQSLTEEDLLPVQQIDISINLEEIDLSTIESLKQLGPFGM
DFPKPMYCIENVNISSMRKIGANQNHVKMELADGPLTLDAVGFSKGHLADEMTPGVAVSFIGDLQINEWNGRKKPQFMIE
DAKTDEWQLYDIRGIRQVNRWHQMILPDNTLYLAFHQSTVHHFQSLLNADIKLISKAQSLPDAKPYIVLLDIPEQEEVLE
NVLTHVQPKRIYAHFYAPESTYFEGMPSRDHFKWYYGFLAKRPSFDLQQHAKDLAKHKGWSESTLFFMTEVFFDLGFVKI
NSGRIDLQETVDKRDLAESTIYQMREKKMQLEQKLLYAPYMELRQWFDARLAEQTVPEEEQVWI

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=986871 MHH33_RS07450 WP_342543413.1 1396298..1398652(+) (recJ) [Paenisporosarcina sp. FSL H8-0542]
ATGATTGAATCAAAAAAGAGATGGCGTATGGAAAGACCAGATGACCAAATCGTTCAACATTTAAAAGAAGCATTGAATTT
ACCGACTGTATCTGCGAAACTTCTAGCGTCTCGCGGATTTTCTGATGTCAACAAAACGAAAGCGTTTTTACATATGGACG
AATCATCCATGCATGATCCGTTTTTATTGCACGATATGGATAAAGCAGTGGAGCGTATTAAAAAAGCAATTGCCGACGAG
GAAATGATTTTGGTATACGGCGATTACGATGCAGATGGTGTGACGAGTACTTCTGTCATGATGACTGCGCTCCAACAACT
GAATGCCAATGTAATGTTTGCCATTCCAAATCGATTTGTTGATGGCTATGGTCCGAGTGAACGATTATTTAAAGAAGCAT
TTGAAGATGGTGTGAGTCTCATCATTACGGTGGATAACGGAATCTCAGGCATCAATGAAATTCAATTAGCCAAGGAATTA
GGTATGGACGTTATTGTAACCGATCACCATGAAGCAGGTGAGATTCTACCACCTGCTGATGCCATTATTCATCCAAGACA
TCCTCTGGGAAGTTATCCTTTCGGAGAATTAGCGGGTGTCGGTGTAGCCTTTAAAGTGGCACATGCTTTACTCGGTGAAG
TGCCGAAAGAACTGTTGGAACTTGTTGCGATCGGGACAATAGCCGACCTGGTTTCTTTGCATGATGAAAATCGATACTTT
GTACAAGCAGGCATTAAACAATTGCGGATGTCAAAAAGACCGGCAATCAAGGCATTGTGTCAGATTGCAGGCACTGAACA
AAATCAAATCAACGAAGAGACGATTGGCTTTATGTTCGGTCCACGCATAAATGCATTAGGTCGATTGGCGGATGCAGGTC
CAGGTGTCGATATGTTTTTGACAACAGATTCTGTGGAAGCGGCATCCCTTGCGAAAGTATTGGACACGCATAATAAAGAA
CGACAGGGCATAGTCAGCCAAATGACCGAAGAAGCCATCGCGATGGTGGAATCAGGTGATATTGGAAAAAATCCATTGGT
GATCGTCGTAGCGAAAGAAGGTTGGAATCCTGGAGTAGTTGGAATTGTTGCGTCCCGCTTGGTTGAAAAGTATTACCGCC
CAACAATCGTGCTTGGTCTCGATTCAGAAAAGGGAATTGCTAAAGGTTCCGCACGAAGTATTGAGGGTTTCCACTTATAT
AATGAACTTGCTAAAAATCGTGATATTTTGCCTCATTTTGGAGGACATCCAATGGCAGCAGGTATGACCCTGCCATTAGA
AAAAGTTACGGATTTGCGTACTAGATTACTAGAGCAAGCCGAGCAGTCATTAACTGAAGAAGATTTACTACCTGTTCAAC
AGATCGATATTTCCATCAACCTCGAAGAAATTGATTTGTCGACAATTGAGTCACTGAAACAACTAGGCCCGTTCGGTATG
GATTTTCCAAAGCCGATGTACTGTATTGAAAACGTCAATATTTCGTCCATGAGAAAAATAGGCGCCAATCAAAATCATGT
GAAAATGGAGCTCGCTGATGGTCCACTGACGCTCGATGCTGTAGGCTTCAGCAAAGGCCATCTGGCAGATGAAATGACGC
CAGGGGTCGCTGTGTCATTTATTGGGGACTTGCAAATCAATGAGTGGAACGGTCGCAAGAAACCGCAATTCATGATTGAA
GATGCGAAAACGGATGAATGGCAACTATATGACATACGTGGGATTCGACAAGTAAATAGATGGCATCAGATGATTCTGCC
TGACAATACATTGTATCTTGCGTTCCATCAATCAACGGTTCATCATTTTCAATCGTTATTGAATGCTGATATTAAGTTGA
TTTCCAAAGCACAATCTTTACCGGACGCGAAACCATATATCGTTTTGCTTGATATTCCGGAACAGGAAGAAGTATTGGAA
AATGTTTTGACACATGTACAACCGAAACGGATTTATGCTCATTTTTATGCTCCAGAATCCACTTATTTTGAAGGAATGCC
TAGCCGCGATCACTTTAAATGGTATTATGGATTTTTGGCTAAACGTCCTTCATTCGATTTGCAACAACACGCGAAAGATC
TTGCCAAACATAAAGGATGGAGCGAAAGTACATTATTTTTCATGACAGAGGTGTTTTTTGACCTTGGTTTTGTTAAAATA
AACAGTGGACGAATTGACCTGCAGGAAACAGTGGATAAACGCGACCTTGCAGAGTCGACGATATATCAAATGCGCGAGAA
AAAGATGCAGCTTGAACAAAAGCTTTTATATGCGCCATATATGGAATTAAGACAATGGTTTGATGCCCGCTTAGCCGAGC
AGACCGTTCCTGAGGAGGAGCAAGTATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-767)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(314-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50.767

99.745

0.506

Multiple sequence alignment