Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MHI37_RS28580 Genome accession   NZ_CP152049
Coordinates   6744693..6746060 (-) Length   455 a.a.
NCBI ID   WP_076338930.1    Uniprot ID   A0A1R1CNI7
Organism   Paenibacillus sp. FSL H8-0548     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6739693..6751060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI37_RS28555 (MHI37_28555) ispD 6740081..6740800 (-) 720 WP_076338925.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MHI37_RS28560 (MHI37_28560) - 6740950..6742047 (-) 1098 WP_076338926.1 PIN/TRAM domain-containing protein -
  MHI37_RS28565 (MHI37_28565) - 6742224..6742619 (+) 396 WP_076338927.1 DUF1573 domain-containing protein -
  MHI37_RS28570 (MHI37_28570) pssA 6742773..6743519 (-) 747 WP_076338928.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MHI37_RS28575 (MHI37_28575) disA 6743606..6744682 (-) 1077 WP_076338929.1 DNA integrity scanning diadenylate cyclase DisA -
  MHI37_RS28580 (MHI37_28580) radA 6744693..6746060 (-) 1368 WP_076338930.1 DNA repair protein RadA Machinery gene
  MHI37_RS28585 (MHI37_28585) - 6746393..6746746 (-) 354 WP_076338931.1 antibiotic biosynthesis monooxygenase -
  MHI37_RS28590 (MHI37_28590) clpC 6746879..6749338 (-) 2460 WP_076338932.1 ATP-dependent protease ATP-binding subunit ClpC -
  MHI37_RS28595 (MHI37_28595) - 6749341..6750420 (-) 1080 WP_076338933.1 protein arginine kinase -
  MHI37_RS28600 (MHI37_28600) - 6750449..6750973 (-) 525 WP_076338934.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49258.95 Da        Isoelectric Point: 7.4395

>NTDB_id=986851 MHI37_RS28580 WP_076338930.1 6744693..6746060(-) (radA) [Paenibacillus sp. FSL H8-0548]
MAKIKTKFVCTECGTEAAKWLGKCPGCHAWNSMVEEKETVVKTKGVGMSSFHAKEKPQSIIHIESGQEPRIETKMLELNR
VLGGGVVPGSLILVGGDPGIGKSTLLLQTSHALAVKGLKVLYISGEESVRQTRLRADRLGALTESLYVLCETNMEQINDA
IESVQPDFLVIDSIQTVYDPNVQSAPGSVSQVRECAAHFMRVAKIKGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHTYRILRAVKNRFGSTNEIGIFEMGEEGLREVSNPSELFLSERPLGVSGSTVVASMEGTRPVLVELQALVATTNFPS
PRRMSTGIDHNRMALIIAVLEKRNGMFLQTQDAYLNVAGGVKLDEPAVDLAAAVSIASSFRDAPTKPYDVIFGEIGLTGE
VRGVSRAEQRVKEAEKLGFKRVIMPEKSLKGWKPPTGIEIIGVSTVSEALKAALG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=986851 MHI37_RS28580 WP_076338930.1 6744693..6746060(-) (radA) [Paenibacillus sp. FSL H8-0548]
ATGGCCAAAATTAAAACAAAGTTTGTTTGTACTGAATGTGGCACCGAAGCGGCGAAATGGCTAGGAAAATGCCCAGGCTG
CCACGCTTGGAACTCGATGGTAGAAGAGAAAGAAACCGTTGTGAAGACGAAGGGCGTCGGAATGTCATCGTTTCATGCGA
AAGAAAAGCCGCAGTCCATCATACATATAGAAAGTGGGCAAGAGCCTCGTATTGAAACAAAGATGCTTGAGCTTAACCGT
GTGCTTGGCGGGGGCGTTGTTCCAGGCTCTCTTATTCTTGTGGGAGGGGACCCCGGTATCGGAAAATCAACGCTGCTGCT
GCAAACCTCTCATGCTCTTGCAGTGAAGGGACTTAAGGTTCTCTATATTTCTGGGGAGGAATCAGTGCGCCAAACGAGAC
TTAGAGCTGATCGACTAGGCGCGCTGACGGAATCGCTGTATGTATTATGCGAGACCAATATGGAGCAAATTAATGATGCG
ATTGAGTCGGTTCAGCCTGATTTCCTCGTCATTGATTCGATTCAAACGGTTTATGATCCGAATGTGCAATCGGCCCCTGG
AAGTGTGTCACAAGTGCGCGAATGCGCAGCGCATTTTATGAGGGTAGCCAAAATTAAAGGAATTGCAACGGTGCTTGTAG
GTCATGTTACGAAGGAAGGCGCTATTGCAGGGCCGCGGCTGCTGGAGCATATGGTCGATTGTGTCCTTTATTTTGAAGGG
GAGCGTCATCATACGTATCGCATTTTGCGGGCTGTAAAAAATCGCTTCGGCTCGACAAACGAGATTGGCATTTTCGAAAT
GGGTGAGGAAGGACTAAGAGAGGTTTCCAACCCATCGGAATTGTTTTTGTCGGAGCGTCCGCTAGGTGTATCAGGATCAA
CGGTAGTAGCGAGCATGGAAGGAACAAGACCTGTGCTGGTAGAGCTGCAGGCGCTTGTGGCAACAACTAATTTTCCTTCT
CCGCGAAGAATGTCCACAGGCATTGACCATAATCGCATGGCACTTATTATTGCGGTGCTCGAGAAGCGAAACGGGATGTT
TCTACAAACGCAGGATGCCTATTTGAACGTTGCGGGCGGAGTAAAGCTGGATGAGCCGGCAGTCGATCTTGCAGCTGCAG
TCAGCATAGCCTCGAGCTTTCGGGATGCTCCGACAAAGCCTTATGATGTCATTTTTGGCGAGATCGGGCTAACAGGTGAG
GTGCGTGGCGTATCGCGTGCAGAGCAGCGGGTCAAGGAAGCAGAGAAGCTTGGCTTTAAACGTGTTATTATGCCTGAGAA
AAGCTTAAAGGGCTGGAAGCCGCCCACAGGCATCGAAATTATTGGCGTAAGCACAGTGTCAGAAGCACTTAAGGCAGCGC
TTGGATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-220)

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R1CNI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.302

100

0.666
  radA Streptococcus mitis NCTC 12261

58.98

99.121

0.585
  radA Streptococcus mitis SK321

58.98

99.121

0.585
  radA Streptococcus pneumoniae Rx1

58.758

99.121

0.582
  radA Streptococcus pneumoniae D39

58.758

99.121

0.582
  radA Streptococcus pneumoniae R6

58.758

99.121

0.582
  radA Streptococcus pneumoniae TIGR4

58.758

99.121

0.582

Multiple sequence alignment