Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MHH29_RS09910 Genome accession   NZ_CP152048
Coordinates   1905961..1906389 (-) Length   142 a.a.
NCBI ID   WP_342495198.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0046     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1900961..1911389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH29_RS09880 (MHH29_09880) - 1901106..1901435 (+) 330 WP_342495196.1 YckD family protein -
  MHH29_RS09885 (MHH29_09885) - 1901482..1902246 (-) 765 WP_216895540.1 MBL fold metallo-hydrolase -
  MHH29_RS09890 (MHH29_09890) - 1902362..1902781 (+) 420 WP_024718958.1 Lrp/AsnC family transcriptional regulator -
  MHH29_RS09895 (MHH29_09895) - 1902806..1903612 (+) 807 WP_342495197.1 AAC(3) family N-acetyltransferase -
  MHH29_RS09900 (MHH29_09900) comJ 1903614..1904000 (-) 387 WP_039166300.1 competence protein ComJ -
  MHH29_RS09905 (MHH29_09905) - 1904137..1905834 (-) 1698 WP_017358550.1 methyl-accepting chemotaxis protein -
  MHH29_RS09910 (MHH29_09910) nucA/comI 1905961..1906389 (-) 429 WP_342495198.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MHH29_RS09915 (MHH29_09915) - 1906758..1908827 (+) 2070 WP_342495199.1 hydantoinase/oxoprolinase family protein -
  MHH29_RS09920 (MHH29_09920) - 1908817..1910802 (+) 1986 WP_342495200.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15912.88 Da        Isoelectric Point: 6.4881

>NTDB_id=986798 MHH29_RS09910 WP_342495198.1 1905961..1906389(-) (nucA/comI) [Bacillus sp. FSL K6-0046]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFVIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=986798 MHH29_RS09910 WP_342495198.1 1905961..1906389(-) (nucA/comI) [Bacillus sp. FSL K6-0046]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCAAAACACA
TAGAAGAAGCAATTGATGAAGGGCATTCTTCCATTTGCACTATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTGTTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment