Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MHH29_RS08210 Genome accession   NZ_CP152048
Coordinates   1584415..1584705 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0046     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579415..1589705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH29_RS08170 (MHH29_08170) - 1579448..1579777 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  MHH29_RS08175 (MHH29_08175) - 1579790..1580230 (+) 441 WP_008341898.1 YaaR family protein -
  MHH29_RS08180 (MHH29_08180) holB 1580242..1581231 (+) 990 WP_024719351.1 DNA polymerase III subunit delta' -
  MHH29_RS08185 (MHH29_08185) - 1581234..1582061 (+) 828 WP_024719352.1 stage 0 sporulation family protein -
  MHH29_RS08190 (MHH29_08190) yabA 1582076..1582429 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  MHH29_RS08195 (MHH29_08195) - 1582485..1583228 (+) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MHH29_RS08200 (MHH29_08200) - 1583215..1583514 (+) 300 WP_159145300.1 GIY-YIG nuclease family protein -
  MHH29_RS08205 (MHH29_08205) rsmI 1583489..1584370 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MHH29_RS08210 (MHH29_08210) abrB 1584415..1584705 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MHH29_RS08215 (MHH29_08215) metG 1585225..1587225 (+) 2001 WP_342495142.1 methionine--tRNA ligase -
  MHH29_RS08220 (MHH29_08220) - 1587307..1588074 (+) 768 WP_342495143.1 TatD family hydrolase -
  MHH29_RS08225 (MHH29_08225) - 1588319..1589521 (+) 1203 WP_007496219.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=986795 MHH29_RS08210 WP_087975202.1 1584415..1584705(-) (abrB) [Bacillus sp. FSL K6-0046]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=986795 MHH29_RS08210 WP_087975202.1 1584415..1584705(-) (abrB) [Bacillus sp. FSL K6-0046]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment