Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R8615_RS08730 Genome accession   NZ_AP026929
Coordinates   1717881..1718591 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain PZ900701114     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712881..1723591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8615_RS08715 (PC1101_17320) - 1713422..1713670 (-) 249 WP_000364990.1 YneF family protein -
  R8615_RS08720 (PC1101_17330) treC 1713926..1715551 (-) 1626 WP_016398080.1 alpha,alpha-phosphotrehalase -
  R8615_RS08725 (PC1101_17340) treP 1715729..1717696 (-) 1968 WP_024477716.1 PTS system trehalose-specific EIIBC component -
  R8615_RS08730 (PC1101_17350) treR 1717881..1718591 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R8615_RS08735 (PC1101_17360) - 1718624..1719427 (-) 804 WP_024477717.1 ABC transporter ATP-binding protein -
  R8615_RS08740 (PC1101_17370) - 1719440..1720333 (-) 894 WP_024477718.1 ABC transporter permease -
  R8615_RS08745 (PC1101_17380) - 1720345..1721076 (-) 732 WP_162489596.1 ABC transporter substrate-binding protein -
  R8615_RS08750 (PC1101_17390) amiF 1721566..1722492 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  R8615_RS08755 (PC1101_17400) amiE 1722503..1723570 (-) 1068 WP_000159556.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=98678 R8615_RS08730 WP_000760673.1 1717881..1718591(+) (treR) [Streptococcus pneumoniae strain PZ900701114]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=98678 R8615_RS08730 WP_000760673.1 1717881..1718591(+) (treR) [Streptococcus pneumoniae strain PZ900701114]
ATGAAAAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTTCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment