Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MHH29_RS00535 Genome accession   NZ_CP152048
Coordinates   90855..91625 (-) Length   256 a.a.
NCBI ID   WP_342494825.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0046     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 85855..96625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH29_RS00515 (MHH29_00515) - 85948..86769 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  MHH29_RS00520 (MHH29_00520) - 86795..87433 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  MHH29_RS00525 (MHH29_00525) glyS 87600..89645 (-) 2046 WP_342494824.1 glycine--tRNA ligase subunit beta -
  MHH29_RS00530 (MHH29_00530) glyQ 89638..90525 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  MHH29_RS00535 (MHH29_00535) recO 90855..91625 (-) 771 WP_342494825.1 DNA repair protein RecO Machinery gene
  MHH29_RS00540 (MHH29_00540) - 91661..91804 (-) 144 WP_008342408.1 YqzL family protein -
  MHH29_RS00545 (MHH29_00545) era 91952..92857 (-) 906 WP_007501305.1 GTPase Era -
  MHH29_RS00550 (MHH29_00550) - 92850..93248 (-) 399 WP_008342410.1 cytidine deaminase -
  MHH29_RS00555 (MHH29_00555) - 93361..93747 (-) 387 WP_024718818.1 diacylglycerol kinase family protein -
  MHH29_RS00560 (MHH29_00560) ybeY 93725..94204 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  MHH29_RS00565 (MHH29_00565) - 94205..96292 (-) 2088 WP_205831371.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29371.08 Da        Isoelectric Point: 8.4252

>NTDB_id=986769 MHH29_RS00535 WP_342494825.1 90855..91625(-) (recO) [Bacillus sp. FSL K6-0046]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRYLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=986769 MHH29_RS00535 WP_342494825.1 90855..91625(-) (recO) [Bacillus sp. FSL K6-0046]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGGACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCTATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTATATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment